Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1451

Experiment: Low light with ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1450 and Rru_A1451 are separated by 295 nucleotidesRru_A1451 and Rru_A1452 are separated by 82 nucleotidesRru_A1452 and Rru_A1453 are separated by 9 nucleotides Rru_A1450: Rru_A1450 - Transcriptional Regulator, ArsR family (NCBI), at 1,715,068 to 1,716,021 _A1450 Rru_A1451: Rru_A1451 - hypothetical protein (NCBI), at 1,716,317 to 1,716,646 _A1451 Rru_A1452: Rru_A1452 - GCN5-related N-acetyltransferase (NCBI), at 1,716,729 to 1,717,361 _A1452 Rru_A1453: Rru_A1453 - Phage Tail Collar (NCBI), at 1,717,371 to 1,717,934 _A1453 Position (kb) 1716 1717Strain fitness (log2 ratio) -1 0 1at 1715.492 kb on + strand, within Rru_A1450at 1715.493 kb on - strand, within Rru_A1450at 1715.493 kb on - strand, within Rru_A1450at 1715.493 kb on - strand, within Rru_A1450at 1715.493 kb on - strand, within Rru_A1450at 1715.523 kb on + strand, within Rru_A1450at 1715.524 kb on - strand, within Rru_A1450at 1715.787 kb on - strand, within Rru_A1450at 1715.820 kb on - strand, within Rru_A1450at 1715.820 kb on - strand, within Rru_A1450at 1716.262 kb on + strandat 1716.644 kb on + strandat 1716.730 kb on + strandat 1716.731 kb on - strandat 1716.731 kb on - strandat 1716.841 kb on + strand, within Rru_A1452at 1716.842 kb on - strand, within Rru_A1452at 1717.027 kb on + strand, within Rru_A1452at 1717.027 kb on + strand, within Rru_A1452at 1717.027 kb on + strand, within Rru_A1452at 1717.028 kb on - strand, within Rru_A1452at 1717.028 kb on - strand, within Rru_A1452at 1717.085 kb on - strand, within Rru_A1452at 1717.087 kb on + strand, within Rru_A1452at 1717.087 kb on + strand, within Rru_A1452at 1717.087 kb on + strand, within Rru_A1452at 1717.087 kb on + strand, within Rru_A1452at 1717.087 kb on + strand, within Rru_A1452at 1717.088 kb on - strand, within Rru_A1452at 1717.088 kb on - strand, within Rru_A1452at 1717.105 kb on + strand, within Rru_A1452at 1717.111 kb on + strand, within Rru_A1452at 1717.112 kb on - strand, within Rru_A1452at 1717.112 kb on - strand, within Rru_A1452at 1717.112 kb on - strand, within Rru_A1452at 1717.201 kb on + strand, within Rru_A1452at 1717.414 kb on + strandat 1717.415 kb on - strandat 1717.415 kb on - strandat 1717.415 kb on - strandat 1717.429 kb on + strand, within Rru_A1453at 1717.430 kb on - strand, within Rru_A1453at 1717.640 kb on + strand, within Rru_A1453at 1717.640 kb on + strand, within Rru_A1453at 1717.640 kb on + strand, within Rru_A1453at 1717.640 kb on + strand, within Rru_A1453at 1717.640 kb on + strand, within Rru_A1453at 1717.640 kb on + strand, within Rru_A1453at 1717.641 kb on - strand, within Rru_A1453at 1717.641 kb on - strand, within Rru_A1453

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Per-strain Table

Position Strand Gene LocusTag Fraction Low light with ammonium chloride
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1,715,492 + Rru_A1450 0.44 -0.3
1,715,493 - Rru_A1450 0.45 -0.4
1,715,493 - Rru_A1450 0.45 -0.0
1,715,493 - Rru_A1450 0.45 -1.0
1,715,493 - Rru_A1450 0.45 -0.7
1,715,523 + Rru_A1450 0.48 -0.6
1,715,524 - Rru_A1450 0.48 -0.1
1,715,787 - Rru_A1450 0.75 +0.8
1,715,820 - Rru_A1450 0.79 +0.3
1,715,820 - Rru_A1450 0.79 -0.1
1,716,262 + +0.3
1,716,644 + +0.1
1,716,730 + +0.8
1,716,731 - +0.0
1,716,731 - -0.4
1,716,841 + Rru_A1452 0.18 +0.2
1,716,842 - Rru_A1452 0.18 +0.8
1,717,027 + Rru_A1452 0.47 -0.4
1,717,027 + Rru_A1452 0.47 +0.5
1,717,027 + Rru_A1452 0.47 -0.6
1,717,028 - Rru_A1452 0.47 +1.0
1,717,028 - Rru_A1452 0.47 -1.3
1,717,085 - Rru_A1452 0.56 -0.3
1,717,087 + Rru_A1452 0.57 -0.5
1,717,087 + Rru_A1452 0.57 -0.5
1,717,087 + Rru_A1452 0.57 +0.0
1,717,087 + Rru_A1452 0.57 -0.2
1,717,087 + Rru_A1452 0.57 -0.5
1,717,088 - Rru_A1452 0.57 +0.2
1,717,088 - Rru_A1452 0.57 -0.5
1,717,105 + Rru_A1452 0.59 +0.4
1,717,111 + Rru_A1452 0.60 -0.2
1,717,112 - Rru_A1452 0.61 -0.1
1,717,112 - Rru_A1452 0.61 +0.1
1,717,112 - Rru_A1452 0.61 +0.8
1,717,201 + Rru_A1452 0.75 -0.5
1,717,414 + -0.3
1,717,415 - +0.1
1,717,415 - +0.8
1,717,415 - -1.2
1,717,429 + Rru_A1453 0.10 -1.2
1,717,430 - Rru_A1453 0.10 -0.2
1,717,640 + Rru_A1453 0.48 +0.5
1,717,640 + Rru_A1453 0.48 +0.2
1,717,640 + Rru_A1453 0.48 -0.5
1,717,640 + Rru_A1453 0.48 +0.2
1,717,640 + Rru_A1453 0.48 -0.3
1,717,640 + Rru_A1453 0.48 -0.6
1,717,641 - Rru_A1453 0.48 -0.8
1,717,641 - Rru_A1453 0.48 -0.3

Or see this region's nucleotide sequence