Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0766

Experiment: Low light with ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0765 and Rru_A0766 are separated by 987 nucleotidesRru_A0766 and Rru_A0767 are separated by 98 nucleotides Rru_A0765: Rru_A0765 - hypothetical protein (NCBI), at 898,719 to 902,156 _A0765 Rru_A0766: Rru_A0766 - Adenosine deaminase (NCBI), at 903,144 to 904,148 _A0766 Rru_A0767: Rru_A0767 - ABC transporter component (NCBI), at 904,247 to 905,320 _A0767 Position (kb) 903 904 905Strain fitness (log2 ratio) -2 -1 0 1 2at 902.189 kb on - strandat 902.201 kb on - strandat 902.241 kb on + strandat 902.241 kb on + strandat 902.241 kb on + strandat 902.242 kb on - strandat 902.242 kb on - strandat 902.242 kb on - strandat 902.242 kb on - strandat 902.264 kb on - strandat 902.298 kb on + strandat 902.298 kb on + strandat 902.299 kb on - strandat 902.300 kb on - strandat 902.306 kb on + strandat 902.306 kb on + strandat 902.307 kb on - strandat 902.307 kb on - strandat 902.307 kb on - strandat 902.307 kb on - strandat 902.356 kb on + strandat 902.357 kb on - strandat 902.365 kb on + strandat 902.365 kb on + strandat 902.428 kb on + strandat 902.428 kb on + strandat 902.428 kb on + strandat 902.428 kb on + strandat 902.438 kb on - strandat 902.451 kb on + strandat 902.451 kb on + strandat 902.451 kb on + strandat 902.483 kb on - strandat 902.649 kb on + strandat 902.649 kb on + strandat 902.650 kb on - strandat 902.662 kb on - strandat 902.695 kb on + strandat 902.696 kb on - strandat 902.696 kb on - strandat 902.696 kb on - strandat 902.696 kb on - strandat 902.696 kb on - strandat 902.696 kb on - strandat 902.700 kb on + strandat 902.751 kb on - strandat 902.920 kb on + strandat 902.984 kb on - strandat 903.023 kb on + strandat 903.025 kb on + strandat 903.026 kb on - strandat 903.026 kb on - strandat 903.030 kb on + strandat 903.290 kb on + strand, within Rru_A0766at 903.290 kb on + strand, within Rru_A0766at 903.290 kb on + strand, within Rru_A0766at 903.290 kb on + strand, within Rru_A0766at 903.290 kb on + strand, within Rru_A0766at 903.290 kb on + strand, within Rru_A0766at 903.290 kb on + strand, within Rru_A0766at 903.290 kb on + strand, within Rru_A0766at 903.291 kb on - strand, within Rru_A0766at 903.291 kb on - strand, within Rru_A0766at 903.291 kb on - strand, within Rru_A0766at 903.291 kb on - strand, within Rru_A0766at 903.292 kb on + strand, within Rru_A0766at 903.293 kb on - strand, within Rru_A0766at 903.305 kb on - strand, within Rru_A0766at 903.532 kb on + strand, within Rru_A0766at 903.533 kb on - strand, within Rru_A0766at 903.533 kb on - strand, within Rru_A0766at 903.641 kb on + strand, within Rru_A0766at 903.641 kb on + strand, within Rru_A0766at 903.641 kb on + strand, within Rru_A0766at 903.642 kb on - strand, within Rru_A0766at 903.726 kb on + strand, within Rru_A0766at 903.727 kb on - strand, within Rru_A0766at 903.834 kb on - strand, within Rru_A0766at 903.898 kb on + strand, within Rru_A0766at 903.898 kb on + strand, within Rru_A0766at 903.898 kb on + strand, within Rru_A0766at 903.899 kb on - strand, within Rru_A0766at 903.948 kb on - strand, within Rru_A0766at 903.959 kb on - strand, within Rru_A0766at 903.959 kb on - strand, within Rru_A0766at 903.994 kb on + strand, within Rru_A0766at 903.994 kb on + strand, within Rru_A0766at 903.994 kb on + strand, within Rru_A0766at 903.995 kb on - strand, within Rru_A0766at 903.995 kb on - strand, within Rru_A0766at 904.179 kb on + strandat 904.179 kb on + strandat 904.179 kb on + strandat 904.180 kb on - strandat 904.180 kb on - strandat 904.180 kb on - strandat 904.180 kb on - strandat 904.180 kb on - strandat 904.180 kb on - strandat 904.180 kb on - strandat 904.184 kb on - strandat 904.626 kb on + strand, within Rru_A0767at 904.626 kb on + strand, within Rru_A0767at 904.626 kb on + strand, within Rru_A0767at 904.627 kb on - strand, within Rru_A0767

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Per-strain Table

Position Strand Gene LocusTag Fraction Low light with ammonium chloride
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902,189 - -0.4
902,201 - -0.4
902,241 + -0.1
902,241 + +0.0
902,241 + +0.9
902,242 - -0.3
902,242 - -0.4
902,242 - +1.2
902,242 - -0.4
902,264 - -0.8
902,298 + -0.1
902,298 + +0.9
902,299 - +0.0
902,300 - -0.6
902,306 + +0.9
902,306 + -0.1
902,307 - +0.1
902,307 - +0.9
902,307 - +0.2
902,307 - -0.0
902,356 + -0.5
902,357 - -0.2
902,365 + +0.7
902,365 + -0.4
902,428 + -0.1
902,428 + -0.3
902,428 + +0.9
902,428 + +0.3
902,438 - +1.6
902,451 + +0.4
902,451 + -0.5
902,451 + +0.5
902,483 - -0.7
902,649 + +0.9
902,649 + +0.9
902,650 - +0.1
902,662 - -0.2
902,695 + -0.5
902,696 - +0.3
902,696 - -0.4
902,696 - +0.9
902,696 - -0.0
902,696 - -0.5
902,696 - +0.1
902,700 + +0.9
902,751 - -0.6
902,920 + +0.9
902,984 - -0.5
903,023 + -0.6
903,025 + -1.1
903,026 - -0.5
903,026 - +0.3
903,030 + -0.5
903,290 + Rru_A0766 0.15 +1.7
903,290 + Rru_A0766 0.15 -0.9
903,290 + Rru_A0766 0.15 +0.8
903,290 + Rru_A0766 0.15 -0.1
903,290 + Rru_A0766 0.15 +0.3
903,290 + Rru_A0766 0.15 +0.9
903,290 + Rru_A0766 0.15 -0.2
903,290 + Rru_A0766 0.15 +0.1
903,291 - Rru_A0766 0.15 -1.3
903,291 - Rru_A0766 0.15 +0.9
903,291 - Rru_A0766 0.15 -0.9
903,291 - Rru_A0766 0.15 +1.9
903,292 + Rru_A0766 0.15 +0.4
903,293 - Rru_A0766 0.15 +0.5
903,305 - Rru_A0766 0.16 +0.8
903,532 + Rru_A0766 0.39 -0.5
903,533 - Rru_A0766 0.39 +0.2
903,533 - Rru_A0766 0.39 +0.9
903,641 + Rru_A0766 0.49 -0.3
903,641 + Rru_A0766 0.49 -0.7
903,641 + Rru_A0766 0.49 -1.1
903,642 - Rru_A0766 0.50 -0.3
903,726 + Rru_A0766 0.58 -0.0
903,727 - Rru_A0766 0.58 +0.9
903,834 - Rru_A0766 0.69 +0.9
903,898 + Rru_A0766 0.75 +0.1
903,898 + Rru_A0766 0.75 -0.1
903,898 + Rru_A0766 0.75 +1.3
903,899 - Rru_A0766 0.75 +0.6
903,948 - Rru_A0766 0.80 +0.9
903,959 - Rru_A0766 0.81 +0.6
903,959 - Rru_A0766 0.81 -0.7
903,994 + Rru_A0766 0.85 +1.5
903,994 + Rru_A0766 0.85 -0.4
903,994 + Rru_A0766 0.85 -0.6
903,995 - Rru_A0766 0.85 +0.9
903,995 - Rru_A0766 0.85 -0.3
904,179 + -0.2
904,179 + -0.8
904,179 + -0.6
904,180 - -0.2
904,180 - -0.4
904,180 - -0.5
904,180 - -1.9
904,180 - -0.8
904,180 - +0.5
904,180 - +0.0
904,184 - -1.5
904,626 + Rru_A0767 0.35 -0.0
904,626 + Rru_A0767 0.35 -1.1
904,626 + Rru_A0767 0.35 -0.1
904,627 - Rru_A0767 0.35 -0.1

Or see this region's nucleotide sequence