Experiment: Low light with ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0718 and Rru_A0719 are separated by 133 nucleotides Rru_A0719 and Rru_A0720 are separated by 94 nucleotides Rru_A0720 and Rru_A0721 are separated by 52 nucleotides Rru_A0721 and Rru_A0722 overlap by 4 nucleotides
Rru_A0718: Rru_A0718 - chemotaxis sensory transducer (NCBI), at 845,848 to 847,857
_A0718
Rru_A0719: Rru_A0719 - hypothetical protein (NCBI), at 847,991 to 848,746
_A0719
Rru_A0720: Rru_A0720 - Transcriptional Regulator, MarR family (NCBI), at 848,841 to 849,335
_A0720
Rru_A0721: Rru_A0721 - Anti-Sigm factor, ChrR (NCBI), at 849,388 to 850,062
_A0721
Rru_A0722: Rru_A0722 - Sigma-24 (FecI) (NCBI), at 850,059 to 850,679
_A0722
Position (kb) 848
849
850 Strain fitness (log2 ratio) -1
0
1
2 at 847.933 kb on + strand at 847.933 kb on + strand at 847.934 kb on - strand at 847.934 kb on - strand at 847.936 kb on + strand at 847.936 kb on + strand at 847.937 kb on - strand at 847.938 kb on + strand at 847.938 kb on + strand at 847.938 kb on + strand at 847.939 kb on - strand at 847.939 kb on - strand at 847.939 kb on - strand at 847.939 kb on - strand at 847.939 kb on - strand at 848.017 kb on - strand at 848.123 kb on + strand, within Rru_A0719 at 848.124 kb on - strand, within Rru_A0719 at 848.124 kb on - strand, within Rru_A0719 at 848.135 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.225 kb on + strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.226 kb on - strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.291 kb on + strand, within Rru_A0719 at 848.292 kb on - strand, within Rru_A0719 at 848.861 kb on + strand at 848.862 kb on - strand at 848.862 kb on - strand at 848.862 kb on - strand at 849.060 kb on - strand, within Rru_A0720 at 849.061 kb on + strand, within Rru_A0720 at 849.062 kb on - strand, within Rru_A0720 at 849.089 kb on + strand, within Rru_A0720 at 849.091 kb on + strand, within Rru_A0720 at 849.091 kb on + strand, within Rru_A0720 at 849.091 kb on + strand, within Rru_A0720 at 849.091 kb on + strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.092 kb on - strand, within Rru_A0720 at 849.112 kb on + strand, within Rru_A0720 at 849.112 kb on + strand, within Rru_A0720 at 849.112 kb on + strand, within Rru_A0720 at 849.113 kb on - strand, within Rru_A0720 at 849.113 kb on - strand, within Rru_A0720 at 849.113 kb on - strand, within Rru_A0720 at 849.115 kb on + strand, within Rru_A0720 at 849.165 kb on - strand, within Rru_A0720 at 849.194 kb on + strand, within Rru_A0720 at 849.194 kb on + strand, within Rru_A0720 at 849.195 kb on - strand, within Rru_A0720 at 849.195 kb on - strand, within Rru_A0720 at 849.195 kb on - strand, within Rru_A0720 at 849.284 kb on - strand, within Rru_A0720 at 849.300 kb on + strand at 849.300 kb on + strand at 849.383 kb on + strand at 849.389 kb on + strand at 849.389 kb on + strand at 849.389 kb on + strand at 849.390 kb on - strand at 849.434 kb on + strand at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.584 kb on + strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721 at 849.585 kb on - strand, within Rru_A0721
Per-strain Table
Position Strand Gene LocusTag Fraction Low light with ammonium chloride remove 847,933 + -0.1 847,933 + -0.9 847,934 - +0.1 847,934 - -0.6 847,936 + -0.1 847,936 + -0.6 847,937 - -1.1 847,938 + +0.4 847,938 + -1.0 847,938 + -0.9 847,939 - -0.4 847,939 - -0.4 847,939 - +0.2 847,939 - +0.3 847,939 - +0.9 848,017 - -1.0 848,123 + Rru_A0719 0.17 +0.4 848,124 - Rru_A0719 0.18 -0.6 848,124 - Rru_A0719 0.18 +0.8 848,135 + Rru_A0719 0.19 -0.3 848,225 + Rru_A0719 0.31 -0.3 848,225 + Rru_A0719 0.31 -0.1 848,225 + Rru_A0719 0.31 -0.2 848,225 + Rru_A0719 0.31 +1.4 848,225 + Rru_A0719 0.31 -0.1 848,225 + Rru_A0719 0.31 +0.4 848,225 + Rru_A0719 0.31 -0.2 848,225 + Rru_A0719 0.31 -0.1 848,225 + Rru_A0719 0.31 +0.9 848,226 - Rru_A0719 0.31 +0.5 848,226 - Rru_A0719 0.31 -0.1 848,226 - Rru_A0719 0.31 -0.4 848,226 - Rru_A0719 0.31 -0.2 848,226 - Rru_A0719 0.31 -0.5 848,226 - Rru_A0719 0.31 -0.2 848,226 - Rru_A0719 0.31 +0.9 848,291 + Rru_A0719 0.40 -0.1 848,291 + Rru_A0719 0.40 -0.6 848,291 + Rru_A0719 0.40 -0.0 848,291 + Rru_A0719 0.40 +0.3 848,291 + Rru_A0719 0.40 -0.5 848,292 - Rru_A0719 0.40 -0.5 848,861 + +0.1 848,862 - -1.2 848,862 - +0.2 848,862 - +0.9 849,060 - Rru_A0720 0.44 +0.2 849,061 + Rru_A0720 0.44 -0.1 849,062 - Rru_A0720 0.45 +0.1 849,089 + Rru_A0720 0.50 -0.3 849,091 + Rru_A0720 0.51 +0.2 849,091 + Rru_A0720 0.51 -0.2 849,091 + Rru_A0720 0.51 +2.2 849,091 + Rru_A0720 0.51 +0.1 849,092 - Rru_A0720 0.51 +0.9 849,092 - Rru_A0720 0.51 +0.4 849,092 - Rru_A0720 0.51 +0.2 849,092 - Rru_A0720 0.51 -0.9 849,092 - Rru_A0720 0.51 -0.6 849,112 + Rru_A0720 0.55 +0.9 849,112 + Rru_A0720 0.55 +0.3 849,112 + Rru_A0720 0.55 +0.9 849,113 - Rru_A0720 0.55 -0.2 849,113 - Rru_A0720 0.55 +0.9 849,113 - Rru_A0720 0.55 +0.5 849,115 + Rru_A0720 0.55 -0.0 849,165 - Rru_A0720 0.65 +0.9 849,194 + Rru_A0720 0.71 +0.8 849,194 + Rru_A0720 0.71 +0.8 849,195 - Rru_A0720 0.72 +0.9 849,195 - Rru_A0720 0.72 +0.6 849,195 - Rru_A0720 0.72 +1.1 849,284 - Rru_A0720 0.89 -0.1 849,300 + +0.6 849,300 + +0.0 849,383 + +0.1 849,389 + +0.2 849,389 + +0.1 849,389 + +0.2 849,390 - -0.2 849,434 + -0.7 849,584 + Rru_A0721 0.29 -0.4 849,584 + Rru_A0721 0.29 -0.3 849,584 + Rru_A0721 0.29 -0.8 849,584 + Rru_A0721 0.29 -0.3 849,584 + Rru_A0721 0.29 -1.4 849,584 + Rru_A0721 0.29 +1.1 849,585 - Rru_A0721 0.29 -0.9 849,585 - Rru_A0721 0.29 +0.9 849,585 - Rru_A0721 0.29 +0.5 849,585 - Rru_A0721 0.29 +0.0 849,585 - Rru_A0721 0.29 -0.4 849,585 - Rru_A0721 0.29 -0.8 849,585 - Rru_A0721 0.29 -0.0
Or see this region's nucleotide sequence