Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0693

Experiment: Low light with ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0692 and Rru_A0693 are separated by 15 nucleotidesRru_A0693 and Rru_A0694 overlap by 8 nucleotidesRru_A0694 and Rru_A0695 are separated by 429 nucleotides Rru_A0692: Rru_A0692 - Response regulator receiver domain protein (CheY) (NCBI), at 820,548 to 821,720 _A0692 Rru_A0693: Rru_A0693 - Signal Transduction Histidine Kinase (NCBI), at 821,736 to 822,938 _A0693 Rru_A0694: Rru_A0694 - Response regulator receiver (CheY) and unknown domain protein (NCBI), at 822,931 to 823,374 _A0694 Rru_A0695: Rru_A0695 - 2-isopropylmalate synthase/homocitrate synthase (NCBI), at 823,804 to 825,405 _A0695 Position (kb) 821 822 823Strain fitness (log2 ratio) -1 0 1at 820.911 kb on + strand, within Rru_A0692at 820.982 kb on + strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.983 kb on - strand, within Rru_A0692at 820.998 kb on + strand, within Rru_A0692at 820.998 kb on + strand, within Rru_A0692at 821.011 kb on - strand, within Rru_A0692at 821.234 kb on + strand, within Rru_A0692at 821.234 kb on + strand, within Rru_A0692at 821.235 kb on - strand, within Rru_A0692at 821.268 kb on + strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.269 kb on - strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.442 kb on + strand, within Rru_A0692at 821.467 kb on + strand, within Rru_A0692at 821.534 kb on + strand, within Rru_A0692at 821.534 kb on + strand, within Rru_A0692at 821.535 kb on - strand, within Rru_A0692at 821.737 kb on + strandat 821.737 kb on + strandat 821.737 kb on + strandat 821.738 kb on - strandat 821.766 kb on - strandat 821.989 kb on + strand, within Rru_A0693at 821.990 kb on - strand, within Rru_A0693at 821.990 kb on - strand, within Rru_A0693at 821.990 kb on - strand, within Rru_A0693at 822.139 kb on + strand, within Rru_A0693at 822.139 kb on + strand, within Rru_A0693at 822.140 kb on - strand, within Rru_A0693at 822.140 kb on - strand, within Rru_A0693at 822.140 kb on - strand, within Rru_A0693at 822.140 kb on - strand, within Rru_A0693at 822.190 kb on + strand, within Rru_A0693at 822.191 kb on - strand, within Rru_A0693at 822.408 kb on + strand, within Rru_A0693at 822.494 kb on - strand, within Rru_A0693at 822.525 kb on + strand, within Rru_A0693at 822.593 kb on - strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.627 kb on + strand, within Rru_A0693at 822.628 kb on - strand, within Rru_A0693at 822.628 kb on - strand, within Rru_A0693at 822.628 kb on - strand, within Rru_A0693at 822.905 kb on + strandat 822.905 kb on + strandat 822.905 kb on + strandat 822.906 kb on - strandat 823.139 kb on + strand, within Rru_A0694at 823.140 kb on - strand, within Rru_A0694at 823.140 kb on - strand, within Rru_A0694at 823.140 kb on - strand, within Rru_A0694at 823.202 kb on + strand, within Rru_A0694at 823.202 kb on + strand, within Rru_A0694at 823.298 kb on + strand, within Rru_A0694at 823.298 kb on + strand, within Rru_A0694at 823.298 kb on + strand, within Rru_A0694at 823.299 kb on - strand, within Rru_A0694at 823.299 kb on - strand, within Rru_A0694at 823.342 kb on + strandat 823.343 kb on - strandat 823.374 kb on + strandat 823.375 kb on - strandat 823.497 kb on + strandat 823.498 kb on - strandat 823.498 kb on - strandat 823.502 kb on - strandat 823.502 kb on - strandat 823.511 kb on - strandat 823.523 kb on - strandat 823.608 kb on + strandat 823.608 kb on + strandat 823.822 kb on + strandat 823.823 kb on - strandat 823.828 kb on + strandat 823.828 kb on + strandat 823.930 kb on + strandat 823.930 kb on + strandat 823.930 kb on + strandat 823.931 kb on - strandat 823.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Low light with ammonium chloride
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820,911 + Rru_A0692 0.31 -0.0
820,982 + Rru_A0692 0.37 -0.1
820,983 - Rru_A0692 0.37 +0.2
820,983 - Rru_A0692 0.37 -0.1
820,983 - Rru_A0692 0.37 -0.2
820,983 - Rru_A0692 0.37 +0.3
820,998 + Rru_A0692 0.38 +1.5
820,998 + Rru_A0692 0.38 +0.2
821,011 - Rru_A0692 0.39 +0.2
821,234 + Rru_A0692 0.58 -1.3
821,234 + Rru_A0692 0.58 +0.2
821,235 - Rru_A0692 0.59 -0.3
821,268 + Rru_A0692 0.61 -0.2
821,269 - Rru_A0692 0.61 +1.5
821,269 - Rru_A0692 0.61 +0.9
821,269 - Rru_A0692 0.61 -0.7
821,269 - Rru_A0692 0.61 -0.4
821,442 + Rru_A0692 0.76 -0.9
821,442 + Rru_A0692 0.76 -0.2
821,442 + Rru_A0692 0.76 -0.1
821,442 + Rru_A0692 0.76 +0.3
821,442 + Rru_A0692 0.76 +0.1
821,467 + Rru_A0692 0.78 +0.0
821,534 + Rru_A0692 0.84 -0.3
821,534 + Rru_A0692 0.84 -0.4
821,535 - Rru_A0692 0.84 -0.4
821,737 + +0.5
821,737 + +0.9
821,737 + +0.0
821,738 - -0.4
821,766 - -0.9
821,989 + Rru_A0693 0.21 +0.9
821,990 - Rru_A0693 0.21 -0.3
821,990 - Rru_A0693 0.21 +0.2
821,990 - Rru_A0693 0.21 -0.5
822,139 + Rru_A0693 0.33 -0.5
822,139 + Rru_A0693 0.33 +1.1
822,140 - Rru_A0693 0.34 -0.2
822,140 - Rru_A0693 0.34 -0.9
822,140 - Rru_A0693 0.34 -0.7
822,140 - Rru_A0693 0.34 +0.9
822,190 + Rru_A0693 0.38 +0.9
822,191 - Rru_A0693 0.38 -0.5
822,408 + Rru_A0693 0.56 -0.7
822,494 - Rru_A0693 0.63 +0.3
822,525 + Rru_A0693 0.66 -0.5
822,593 - Rru_A0693 0.71 -0.8
822,627 + Rru_A0693 0.74 -0.0
822,627 + Rru_A0693 0.74 +0.1
822,627 + Rru_A0693 0.74 -1.7
822,627 + Rru_A0693 0.74 +0.4
822,627 + Rru_A0693 0.74 -0.9
822,627 + Rru_A0693 0.74 -0.4
822,628 - Rru_A0693 0.74 -0.4
822,628 - Rru_A0693 0.74 -0.6
822,628 - Rru_A0693 0.74 -0.1
822,905 + -0.4
822,905 + -0.3
822,905 + -0.1
822,906 - -0.6
823,139 + Rru_A0694 0.47 +0.1
823,140 - Rru_A0694 0.47 +0.7
823,140 - Rru_A0694 0.47 +0.4
823,140 - Rru_A0694 0.47 -0.3
823,202 + Rru_A0694 0.61 -0.3
823,202 + Rru_A0694 0.61 -0.4
823,298 + Rru_A0694 0.83 -0.7
823,298 + Rru_A0694 0.83 -0.7
823,298 + Rru_A0694 0.83 +0.3
823,299 - Rru_A0694 0.83 +0.1
823,299 - Rru_A0694 0.83 -0.2
823,342 + -0.3
823,343 - +0.1
823,374 + -0.3
823,375 - -0.8
823,497 + -0.5
823,498 - -0.1
823,498 - -1.4
823,502 - +0.9
823,502 - -0.3
823,511 - +0.0
823,523 - -0.8
823,608 + +0.3
823,608 + -1.4
823,822 + -0.5
823,823 - -0.6
823,828 + -0.2
823,828 + -0.7
823,930 + +0.0
823,930 + +0.1
823,930 + -0.6
823,931 - -1.2
823,931 - -0.3

Or see this region's nucleotide sequence