Experiment: Low light with ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0629 and Rru_A0630 are separated by 22 nucleotides Rru_A0630 and Rru_A0631 are separated by 38 nucleotides Rru_A0631 and Rru_A0632 are separated by 435 nucleotides
Rru_A0629: Rru_A0629 - Geranylgeranyl reductase (NCBI), at 747,847 to 749,088
_A0629
Rru_A0630: Rru_A0630 - hypothetical protein (NCBI), at 749,111 to 749,464
_A0630
Rru_A0631: Rru_A0631 - Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI), at 749,503 to 750,855
_A0631
Rru_A0632: Rru_A0632 - chemotaxis sensory transducer (NCBI), at 751,291 to 753,501
_A0632
Position (kb) 749
750
751 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 748.516 kb on + strand, within Rru_A0629 at 748.517 kb on - strand, within Rru_A0629 at 748.547 kb on + strand, within Rru_A0629 at 748.547 kb on + strand, within Rru_A0629 at 748.547 kb on + strand, within Rru_A0629 at 748.548 kb on - strand, within Rru_A0629 at 748.762 kb on + strand, within Rru_A0629 at 748.762 kb on + strand, within Rru_A0629 at 748.762 kb on + strand, within Rru_A0629 at 748.762 kb on + strand, within Rru_A0629 at 748.762 kb on + strand, within Rru_A0629 at 748.762 kb on + strand, within Rru_A0629 at 748.762 kb on + strand, within Rru_A0629 at 748.762 kb on + strand, within Rru_A0629 at 748.763 kb on - strand, within Rru_A0629 at 748.763 kb on - strand, within Rru_A0629 at 748.763 kb on - strand, within Rru_A0629 at 748.763 kb on - strand, within Rru_A0629 at 748.763 kb on - strand, within Rru_A0629 at 748.766 kb on - strand, within Rru_A0629 at 748.993 kb on + strand at 748.994 kb on - strand at 749.032 kb on + strand at 749.032 kb on + strand at 749.032 kb on + strand at 749.032 kb on + strand at 749.032 kb on + strand at 749.033 kb on - strand at 749.033 kb on - strand at 749.033 kb on - strand at 749.033 kb on - strand at 749.033 kb on - strand at 749.033 kb on - strand at 749.033 kb on - strand at 749.552 kb on + strand at 749.552 kb on + strand at 749.552 kb on + strand at 749.552 kb on + strand at 749.553 kb on - strand at 749.610 kb on - strand at 749.849 kb on + strand, within Rru_A0631 at 749.849 kb on + strand, within Rru_A0631 at 749.849 kb on + strand, within Rru_A0631 at 749.849 kb on + strand, within Rru_A0631 at 749.849 kb on + strand, within Rru_A0631 at 749.849 kb on + strand, within Rru_A0631 at 749.850 kb on - strand, within Rru_A0631 at 749.850 kb on - strand, within Rru_A0631 at 749.850 kb on - strand, within Rru_A0631 at 749.850 kb on - strand, within Rru_A0631 at 750.152 kb on + strand, within Rru_A0631 at 750.153 kb on - strand, within Rru_A0631 at 750.244 kb on + strand, within Rru_A0631 at 750.244 kb on + strand, within Rru_A0631 at 750.244 kb on + strand, within Rru_A0631 at 750.245 kb on - strand, within Rru_A0631 at 750.245 kb on - strand, within Rru_A0631 at 750.245 kb on - strand, within Rru_A0631 at 750.245 kb on - strand, within Rru_A0631 at 750.251 kb on + strand, within Rru_A0631 at 750.252 kb on - strand, within Rru_A0631 at 750.252 kb on - strand, within Rru_A0631 at 750.252 kb on - strand, within Rru_A0631 at 750.331 kb on - strand, within Rru_A0631 at 750.861 kb on - strand at 750.862 kb on + strand at 750.862 kb on + strand at 750.863 kb on - strand at 750.868 kb on - strand at 750.902 kb on + strand at 750.902 kb on + strand at 750.904 kb on + strand at 750.904 kb on + strand at 750.904 kb on + strand at 750.904 kb on + strand at 750.905 kb on - strand at 750.905 kb on - strand at 750.905 kb on - strand at 751.011 kb on + strand at 751.012 kb on - strand at 751.061 kb on + strand at 751.061 kb on + strand at 751.062 kb on - strand at 751.062 kb on - strand at 751.105 kb on + strand at 751.105 kb on + strand at 751.105 kb on + strand at 751.106 kb on - strand at 751.106 kb on - strand at 751.106 kb on - strand at 751.222 kb on + strand at 751.239 kb on - strand at 751.241 kb on + strand at 751.241 kb on + strand at 751.242 kb on - strand at 751.264 kb on + strand at 751.264 kb on + strand at 751.264 kb on + strand at 751.265 kb on - strand at 751.265 kb on - strand at 751.265 kb on - strand at 751.337 kb on - strand at 751.419 kb on - strand at 751.625 kb on - strand, within Rru_A0632 at 751.656 kb on + strand, within Rru_A0632 at 751.656 kb on + strand, within Rru_A0632 at 751.799 kb on - strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.846 kb on + strand, within Rru_A0632 at 751.847 kb on - strand, within Rru_A0632 at 751.847 kb on - strand, within Rru_A0632 at 751.847 kb on - strand, within Rru_A0632 at 751.847 kb on - strand, within Rru_A0632
Per-strain Table
Position Strand Gene LocusTag Fraction Low light with ammonium chloride remove 748,516 + Rru_A0629 0.54 +0.0 748,517 - Rru_A0629 0.54 -0.9 748,547 + Rru_A0629 0.56 -0.2 748,547 + Rru_A0629 0.56 -0.7 748,547 + Rru_A0629 0.56 -0.5 748,548 - Rru_A0629 0.56 -0.7 748,762 + Rru_A0629 0.74 -0.4 748,762 + Rru_A0629 0.74 -0.4 748,762 + Rru_A0629 0.74 -0.1 748,762 + Rru_A0629 0.74 -0.1 748,762 + Rru_A0629 0.74 +0.9 748,762 + Rru_A0629 0.74 +0.9 748,762 + Rru_A0629 0.74 +3.7 748,762 + Rru_A0629 0.74 -0.3 748,763 - Rru_A0629 0.74 +0.0 748,763 - Rru_A0629 0.74 -0.7 748,763 - Rru_A0629 0.74 -0.2 748,763 - Rru_A0629 0.74 -0.0 748,763 - Rru_A0629 0.74 -0.2 748,766 - Rru_A0629 0.74 -0.0 748,993 + -0.8 748,994 - -0.2 749,032 + -0.8 749,032 + -0.6 749,032 + -0.7 749,032 + -1.1 749,032 + -0.4 749,033 - -0.3 749,033 - -1.6 749,033 - -0.4 749,033 - +0.1 749,033 - -0.6 749,033 - -1.0 749,033 - -0.5 749,552 + +0.9 749,552 + -0.9 749,552 + +0.2 749,552 + -1.5 749,553 - +0.7 749,610 - -0.0 749,849 + Rru_A0631 0.26 -0.4 749,849 + Rru_A0631 0.26 -1.1 749,849 + Rru_A0631 0.26 -1.6 749,849 + Rru_A0631 0.26 +0.9 749,849 + Rru_A0631 0.26 -0.5 749,849 + Rru_A0631 0.26 -0.4 749,850 - Rru_A0631 0.26 -0.0 749,850 - Rru_A0631 0.26 -1.0 749,850 - Rru_A0631 0.26 -0.4 749,850 - Rru_A0631 0.26 +0.9 750,152 + Rru_A0631 0.48 -0.6 750,153 - Rru_A0631 0.48 -0.2 750,244 + Rru_A0631 0.55 -0.8 750,244 + Rru_A0631 0.55 +0.5 750,244 + Rru_A0631 0.55 -0.5 750,245 - Rru_A0631 0.55 -0.3 750,245 - Rru_A0631 0.55 -0.1 750,245 - Rru_A0631 0.55 -0.1 750,245 - Rru_A0631 0.55 -0.2 750,251 + Rru_A0631 0.55 +0.9 750,252 - Rru_A0631 0.55 -0.1 750,252 - Rru_A0631 0.55 -0.8 750,252 - Rru_A0631 0.55 -0.1 750,331 - Rru_A0631 0.61 +0.9 750,861 - -0.1 750,862 + -1.9 750,862 + +0.1 750,863 - +0.4 750,868 - +0.6 750,902 + +0.0 750,902 + -0.1 750,904 + -0.6 750,904 + +0.4 750,904 + -0.6 750,904 + -0.5 750,905 - +0.4 750,905 - +0.4 750,905 - +0.4 751,011 + +0.3 751,012 - +0.2 751,061 + +0.2 751,061 + +0.8 751,062 - +0.3 751,062 - -0.2 751,105 + +0.0 751,105 + +0.9 751,105 + -1.8 751,106 - +0.2 751,106 - +0.9 751,106 - +0.2 751,222 + +0.5 751,239 - +0.1 751,241 + +0.0 751,241 + -0.2 751,242 - -0.4 751,264 + -0.2 751,264 + -0.4 751,264 + +0.1 751,265 - +0.2 751,265 - +0.1 751,265 - +0.1 751,337 - +0.6 751,419 - +0.1 751,625 - Rru_A0632 0.15 -0.0 751,656 + Rru_A0632 0.17 -0.1 751,656 + Rru_A0632 0.17 +0.1 751,799 - Rru_A0632 0.23 +0.1 751,846 + Rru_A0632 0.25 -0.5 751,846 + Rru_A0632 0.25 -0.7 751,846 + Rru_A0632 0.25 -0.9 751,846 + Rru_A0632 0.25 -0.3 751,846 + Rru_A0632 0.25 -0.3 751,847 - Rru_A0632 0.25 -0.3 751,847 - Rru_A0632 0.25 +0.9 751,847 - Rru_A0632 0.25 -0.3 751,847 - Rru_A0632 0.25 -0.3
Or see this region's nucleotide sequence