Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0386

Experiment: Low light with ammonium chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0385 and Rru_A0386 are separated by 57 nucleotidesRru_A0386 and Rru_A0387 are separated by 75 nucleotidesRru_A0387 and Rru_A0388 are separated by 74 nucleotides Rru_A0385: Rru_A0385 - Gamma-glutamyltransferase (NCBI), at 462,542 to 464,272 _A0385 Rru_A0386: Rru_A0386 - Transcriptional Regulator, ArsR family (NCBI), at 464,330 to 465,022 _A0386 Rru_A0387: Rru_A0387 - Antibiotic biosynthesis monooxygenase (NCBI), at 465,098 to 465,487 _A0387 Rru_A0388: Rru_A0388 - Protein of unknown function DUF6, transmembrane (NCBI), at 465,562 to 466,524 _A0388 Position (kb) 464 465 466Strain fitness (log2 ratio) -2 -1 0 1at 463.334 kb on + strand, within Rru_A0385at 463.334 kb on + strand, within Rru_A0385at 463.335 kb on - strand, within Rru_A0385at 463.335 kb on - strand, within Rru_A0385at 463.379 kb on + strand, within Rru_A0385at 463.447 kb on - strand, within Rru_A0385at 463.544 kb on + strand, within Rru_A0385at 463.545 kb on - strand, within Rru_A0385at 463.545 kb on - strand, within Rru_A0385at 463.602 kb on - strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.748 kb on + strand, within Rru_A0385at 463.749 kb on - strand, within Rru_A0385at 463.749 kb on - strand, within Rru_A0385at 463.749 kb on - strand, within Rru_A0385at 463.751 kb on - strand, within Rru_A0385at 463.751 kb on - strand, within Rru_A0385at 463.751 kb on - strand, within Rru_A0385at 463.766 kb on + strand, within Rru_A0385at 463.767 kb on - strand, within Rru_A0385at 464.123 kb on - strandat 464.152 kb on + strandat 464.152 kb on + strandat 464.164 kb on - strandat 464.222 kb on + strandat 464.222 kb on + strandat 464.268 kb on - strandat 464.622 kb on + strand, within Rru_A0386at 464.623 kb on - strand, within Rru_A0386at 464.623 kb on - strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.682 kb on + strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.683 kb on - strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.811 kb on + strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.812 kb on - strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.867 kb on + strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.868 kb on - strand, within Rru_A0386at 464.894 kb on + strand, within Rru_A0386at 464.895 kb on - strand, within Rru_A0386at 464.959 kb on + strandat 464.960 kb on - strandat 464.960 kb on - strandat 464.960 kb on - strandat 465.022 kb on + strandat 465.034 kb on - strandat 465.064 kb on - strandat 465.149 kb on + strand, within Rru_A0387at 465.149 kb on + strand, within Rru_A0387at 465.149 kb on + strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.150 kb on - strand, within Rru_A0387at 465.260 kb on + strand, within Rru_A0387at 465.354 kb on - strand, within Rru_A0387at 465.386 kb on + strand, within Rru_A0387at 465.386 kb on + strand, within Rru_A0387at 465.387 kb on - strand, within Rru_A0387at 465.486 kb on - strandat 465.486 kb on - strandat 465.579 kb on - strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.634 kb on + strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.635 kb on - strandat 465.724 kb on - strand, within Rru_A0388at 465.724 kb on - strand, within Rru_A0388

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Per-strain Table

Position Strand Gene LocusTag Fraction Low light with ammonium chloride
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463,334 + Rru_A0385 0.46 -0.7
463,334 + Rru_A0385 0.46 -0.5
463,335 - Rru_A0385 0.46 +0.9
463,335 - Rru_A0385 0.46 -0.0
463,379 + Rru_A0385 0.48 +0.2
463,447 - Rru_A0385 0.52 +0.3
463,544 + Rru_A0385 0.58 -0.3
463,545 - Rru_A0385 0.58 +0.7
463,545 - Rru_A0385 0.58 -0.5
463,602 - Rru_A0385 0.61 -0.0
463,748 + Rru_A0385 0.70 -0.6
463,748 + Rru_A0385 0.70 +0.9
463,748 + Rru_A0385 0.70 -0.8
463,748 + Rru_A0385 0.70 +0.0
463,748 + Rru_A0385 0.70 -0.6
463,749 - Rru_A0385 0.70 -0.8
463,749 - Rru_A0385 0.70 -0.2
463,749 - Rru_A0385 0.70 -0.2
463,751 - Rru_A0385 0.70 -0.3
463,751 - Rru_A0385 0.70 -0.0
463,751 - Rru_A0385 0.70 +0.3
463,766 + Rru_A0385 0.71 +1.6
463,767 - Rru_A0385 0.71 -1.4
464,123 - -0.3
464,152 + +0.1
464,152 + +0.2
464,164 - -0.4
464,222 + +0.2
464,222 + +0.6
464,268 - +1.1
464,622 + Rru_A0386 0.42 -0.5
464,623 - Rru_A0386 0.42 -0.3
464,623 - Rru_A0386 0.42 +0.5
464,682 + Rru_A0386 0.51 +0.9
464,682 + Rru_A0386 0.51 -0.2
464,682 + Rru_A0386 0.51 -0.6
464,682 + Rru_A0386 0.51 -0.4
464,682 + Rru_A0386 0.51 +0.4
464,682 + Rru_A0386 0.51 +0.1
464,682 + Rru_A0386 0.51 -0.5
464,683 - Rru_A0386 0.51 -1.4
464,683 - Rru_A0386 0.51 +0.1
464,683 - Rru_A0386 0.51 -1.0
464,683 - Rru_A0386 0.51 +0.9
464,683 - Rru_A0386 0.51 +0.9
464,683 - Rru_A0386 0.51 -0.8
464,683 - Rru_A0386 0.51 -0.0
464,683 - Rru_A0386 0.51 -0.3
464,683 - Rru_A0386 0.51 +0.1
464,683 - Rru_A0386 0.51 -0.2
464,811 + Rru_A0386 0.69 -0.6
464,811 + Rru_A0386 0.69 -0.2
464,811 + Rru_A0386 0.69 +0.9
464,812 - Rru_A0386 0.70 +0.4
464,812 - Rru_A0386 0.70 -0.7
464,812 - Rru_A0386 0.70 -0.7
464,812 - Rru_A0386 0.70 -0.3
464,812 - Rru_A0386 0.70 -0.6
464,867 + Rru_A0386 0.77 -1.1
464,867 + Rru_A0386 0.77 +0.6
464,867 + Rru_A0386 0.77 -0.0
464,868 - Rru_A0386 0.78 -2.2
464,868 - Rru_A0386 0.78 +0.9
464,868 - Rru_A0386 0.78 -0.7
464,868 - Rru_A0386 0.78 +0.9
464,894 + Rru_A0386 0.81 -0.8
464,895 - Rru_A0386 0.82 -0.0
464,959 + -0.3
464,960 - +0.3
464,960 - -0.1
464,960 - -0.3
465,022 + -0.1
465,034 - -0.2
465,064 - -0.4
465,149 + Rru_A0387 0.13 -0.9
465,149 + Rru_A0387 0.13 -0.6
465,149 + Rru_A0387 0.13 -1.8
465,150 - Rru_A0387 0.13 -0.5
465,150 - Rru_A0387 0.13 -1.0
465,150 - Rru_A0387 0.13 -0.4
465,260 + Rru_A0387 0.42 -0.3
465,354 - Rru_A0387 0.66 -0.3
465,386 + Rru_A0387 0.74 -0.8
465,386 + Rru_A0387 0.74 -0.6
465,387 - Rru_A0387 0.74 -0.1
465,486 - -0.1
465,486 - -0.0
465,579 - -0.1
465,634 + -0.1
465,634 + +0.7
465,634 + -0.3
465,634 + +0.0
465,635 - -0.5
465,635 - -0.1
465,635 - +0.7
465,635 - -0.4
465,635 - -0.6
465,724 - Rru_A0388 0.17 +0.9
465,724 - Rru_A0388 0.17 +0.5

Or see this region's nucleotide sequence