Experiment: Low light with ammonium chloride
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0263 and Rru_A0264 are separated by 85 nucleotides Rru_A0264 and Rru_A0265 are separated by 119 nucleotides
Rru_A0263: Rru_A0263 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase (NCBI), at 326,226 to 327,140
_A0263
Rru_A0264: Rru_A0264 - TPR repeat (NCBI), at 327,226 to 329,025
_A0264
Rru_A0265: Rru_A0265 - Electron-transferring-flavoproteindehydrogenase (NCBI), at 329,145 to 330,782
_A0265
Position (kb) 327
328
329
330 Strain fitness (log2 ratio) -1
0
1
2
3 at 327.174 kb on + strand at 327.381 kb on - strand at 327.381 kb on - strand at 327.414 kb on - strand, within Rru_A0264 at 327.414 kb on - strand, within Rru_A0264 at 327.414 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.543 kb on - strand, within Rru_A0264 at 327.627 kb on - strand, within Rru_A0264 at 327.635 kb on + strand, within Rru_A0264 at 327.635 kb on + strand, within Rru_A0264 at 327.635 kb on + strand, within Rru_A0264 at 327.636 kb on - strand, within Rru_A0264 at 327.723 kb on - strand, within Rru_A0264 at 327.723 kb on - strand, within Rru_A0264 at 327.744 kb on - strand, within Rru_A0264 at 328.058 kb on - strand, within Rru_A0264 at 328.124 kb on - strand, within Rru_A0264 at 328.158 kb on - strand, within Rru_A0264 at 328.161 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.383 kb on - strand, within Rru_A0264 at 328.414 kb on - strand, within Rru_A0264 at 328.414 kb on - strand, within Rru_A0264 at 328.467 kb on - strand, within Rru_A0264 at 328.746 kb on - strand, within Rru_A0264 at 328.800 kb on - strand, within Rru_A0264 at 328.800 kb on - strand, within Rru_A0264 at 328.800 kb on - strand, within Rru_A0264 at 328.857 kb on - strand at 328.857 kb on - strand at 328.857 kb on - strand at 328.857 kb on - strand at 329.146 kb on + strand at 329.146 kb on + strand at 329.147 kb on - strand at 329.147 kb on - strand at 329.147 kb on - strand at 329.150 kb on + strand at 329.151 kb on - strand at 329.158 kb on + strand at 329.159 kb on - strand at 329.159 kb on - strand at 329.159 kb on - strand at 329.321 kb on - strand, within Rru_A0265 at 329.341 kb on + strand, within Rru_A0265 at 329.669 kb on + strand, within Rru_A0265 at 329.669 kb on + strand, within Rru_A0265 at 329.772 kb on - strand, within Rru_A0265
Per-strain Table
Position Strand Gene LocusTag Fraction Low light with ammonium chloride remove 327,174 + +0.9 327,381 - +0.3 327,381 - +0.9 327,414 - Rru_A0264 0.10 -0.2 327,414 - Rru_A0264 0.10 -0.2 327,414 - Rru_A0264 0.10 -0.6 327,543 - Rru_A0264 0.18 -0.7 327,543 - Rru_A0264 0.18 -0.9 327,543 - Rru_A0264 0.18 -0.1 327,543 - Rru_A0264 0.18 -0.1 327,543 - Rru_A0264 0.18 -0.5 327,543 - Rru_A0264 0.18 +0.7 327,627 - Rru_A0264 0.22 -0.4 327,635 + Rru_A0264 0.23 +0.9 327,635 + Rru_A0264 0.23 -0.1 327,635 + Rru_A0264 0.23 +0.9 327,636 - Rru_A0264 0.23 -0.2 327,723 - Rru_A0264 0.28 +0.9 327,723 - Rru_A0264 0.28 -0.1 327,744 - Rru_A0264 0.29 +0.9 328,058 - Rru_A0264 0.46 +0.9 328,124 - Rru_A0264 0.50 -0.5 328,158 - Rru_A0264 0.52 +0.4 328,161 - Rru_A0264 0.52 +0.9 328,383 - Rru_A0264 0.64 +0.7 328,383 - Rru_A0264 0.64 +0.9 328,383 - Rru_A0264 0.64 +1.3 328,383 - Rru_A0264 0.64 +0.7 328,383 - Rru_A0264 0.64 +0.5 328,414 - Rru_A0264 0.66 +0.7 328,414 - Rru_A0264 0.66 +0.4 328,467 - Rru_A0264 0.69 +1.5 328,746 - Rru_A0264 0.84 -0.1 328,800 - Rru_A0264 0.87 +2.9 328,800 - Rru_A0264 0.87 +1.0 328,800 - Rru_A0264 0.87 +0.7 328,857 - +0.1 328,857 - +1.6 328,857 - +1.5 328,857 - +1.1 329,146 + +0.9 329,146 + +0.9 329,147 - -0.2 329,147 - -0.3 329,147 - -0.1 329,150 + +2.9 329,151 - -0.6 329,158 + +0.9 329,159 - +0.9 329,159 - +0.9 329,159 - -0.7 329,321 - Rru_A0265 0.11 +0.9 329,341 + Rru_A0265 0.12 -0.1 329,669 + Rru_A0265 0.32 -0.3 329,669 + Rru_A0265 0.32 +0.9 329,772 - Rru_A0265 0.38 -1.1
Or see this region's nucleotide sequence