Experiment: Chloride 0.5 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_39 and Pf6N2E2_40 overlap by 1 nucleotides Pf6N2E2_40 and Pf6N2E2_41 overlap by 1 nucleotides Pf6N2E2_41 and Pf6N2E2_42 overlap by 4 nucleotides Pf6N2E2_42 and Pf6N2E2_43 are separated by 250 nucleotides
Pf6N2E2_39 - FIG00857858: hypothetical protein, at 78,501 to 78,809
_39
Pf6N2E2_40 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 78,809 to 79,120
_40
Pf6N2E2_41 - Two-component system response regulator QseB, at 79,120 to 79,788
_41
Pf6N2E2_42 - Sensor protein PhoQ (EC 2.7.13.3), at 79,785 to 81,098
_42
Pf6N2E2_43 - Histidine permease YuiF, at 81,349 to 82,668
_43
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.804 kb on - strand at 78.807 kb on + strand at 78.808 kb on - strand at 78.808 kb on - strand at 78.833 kb on - strand at 79.023 kb on - strand, within Pf6N2E2_40 at 79.023 kb on - strand, within Pf6N2E2_40 at 79.023 kb on - strand, within Pf6N2E2_40 at 79.025 kb on - strand, within Pf6N2E2_40 at 79.025 kb on - strand, within Pf6N2E2_40 at 79.025 kb on - strand, within Pf6N2E2_40 at 79.029 kb on - strand, within Pf6N2E2_40 at 79.099 kb on - strand at 79.108 kb on + strand at 79.109 kb on - strand at 79.230 kb on - strand, within Pf6N2E2_41 at 79.232 kb on - strand, within Pf6N2E2_41 at 79.252 kb on + strand, within Pf6N2E2_41 at 79.253 kb on - strand, within Pf6N2E2_41 at 79.411 kb on + strand, within Pf6N2E2_41 at 79.600 kb on + strand, within Pf6N2E2_41 at 79.600 kb on + strand, within Pf6N2E2_41 at 79.601 kb on - strand, within Pf6N2E2_41 at 79.601 kb on - strand, within Pf6N2E2_41 at 79.632 kb on + strand, within Pf6N2E2_41 at 79.633 kb on - strand, within Pf6N2E2_41 at 79.658 kb on - strand, within Pf6N2E2_41 at 79.658 kb on - strand, within Pf6N2E2_41 at 79.999 kb on - strand, within Pf6N2E2_42 at 80.023 kb on - strand, within Pf6N2E2_42 at 80.023 kb on - strand, within Pf6N2E2_42 at 80.023 kb on - strand, within Pf6N2E2_42 at 80.211 kb on + strand, within Pf6N2E2_42 at 80.212 kb on - strand, within Pf6N2E2_42 at 80.212 kb on - strand, within Pf6N2E2_42 at 80.278 kb on + strand, within Pf6N2E2_42 at 80.748 kb on + strand, within Pf6N2E2_42 at 80.749 kb on - strand, within Pf6N2E2_42 at 81.170 kb on + strand at 81.170 kb on + strand at 81.170 kb on + strand at 81.171 kb on - strand at 81.171 kb on - strand at 81.171 kb on - strand at 81.344 kb on + strand at 81.344 kb on + strand at 81.344 kb on + strand at 81.344 kb on + strand at 81.345 kb on - strand at 81.353 kb on + strand at 81.353 kb on + strand at 81.353 kb on + strand at 81.354 kb on - strand at 81.354 kb on - strand at 81.354 kb on - strand at 81.354 kb on - strand at 81.362 kb on + strand at 81.362 kb on + strand at 81.429 kb on + strand at 81.532 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.751 kb on + strand, within Pf6N2E2_43 at 81.752 kb on - strand, within Pf6N2E2_43 at 81.752 kb on - strand, within Pf6N2E2_43 at 81.752 kb on - strand, within Pf6N2E2_43 at 81.823 kb on + strand, within Pf6N2E2_43 at 81.823 kb on + strand, within Pf6N2E2_43 at 81.824 kb on - strand, within Pf6N2E2_43 at 81.824 kb on - strand, within Pf6N2E2_43 at 81.824 kb on - strand, within Pf6N2E2_43 at 81.824 kb on - strand, within Pf6N2E2_43 at 82.003 kb on + strand, within Pf6N2E2_43 at 82.049 kb on - strand, within Pf6N2E2_43
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 0.5 M remove 78,804 - -0.7 78,807 + -1.5 78,808 - +0.1 78,808 - +0.1 78,833 - -1.4 79,023 - Pf6N2E2_40 0.69 -1.7 79,023 - Pf6N2E2_40 0.69 -1.3 79,023 - Pf6N2E2_40 0.69 -1.3 79,025 - Pf6N2E2_40 0.69 -0.5 79,025 - Pf6N2E2_40 0.69 -0.5 79,025 - Pf6N2E2_40 0.69 -2.4 79,029 - Pf6N2E2_40 0.71 -0.9 79,099 - +1.9 79,108 + -2.1 79,109 - +0.0 79,230 - Pf6N2E2_41 0.16 +1.0 79,232 - Pf6N2E2_41 0.17 +0.5 79,252 + Pf6N2E2_41 0.20 +0.5 79,253 - Pf6N2E2_41 0.20 -0.4 79,411 + Pf6N2E2_41 0.43 -0.7 79,600 + Pf6N2E2_41 0.72 +0.8 79,600 + Pf6N2E2_41 0.72 -0.3 79,601 - Pf6N2E2_41 0.72 +0.6 79,601 - Pf6N2E2_41 0.72 +0.0 79,632 + Pf6N2E2_41 0.77 +1.2 79,633 - Pf6N2E2_41 0.77 +0.2 79,658 - Pf6N2E2_41 0.80 +1.4 79,658 - Pf6N2E2_41 0.80 +0.2 79,999 - Pf6N2E2_42 0.16 +0.4 80,023 - Pf6N2E2_42 0.18 -1.0 80,023 - Pf6N2E2_42 0.18 -2.3 80,023 - Pf6N2E2_42 0.18 -3.2 80,211 + Pf6N2E2_42 0.32 -0.3 80,212 - Pf6N2E2_42 0.32 -1.3 80,212 - Pf6N2E2_42 0.32 -2.6 80,278 + Pf6N2E2_42 0.38 +1.6 80,748 + Pf6N2E2_42 0.73 -2.0 80,749 - Pf6N2E2_42 0.73 +0.0 81,170 + -0.2 81,170 + -0.5 81,170 + -0.2 81,171 - +1.0 81,171 - -0.6 81,171 - -1.3 81,344 + -0.1 81,344 + +1.2 81,344 + +0.1 81,344 + +0.3 81,345 - -1.6 81,353 + -1.0 81,353 + -0.1 81,353 + +2.1 81,354 - -1.4 81,354 - -0.3 81,354 - +1.4 81,354 - +0.9 81,362 + +0.3 81,362 + +1.3 81,429 + +0.1 81,532 + Pf6N2E2_43 0.14 +0.2 81,751 + Pf6N2E2_43 0.30 +0.8 81,751 + Pf6N2E2_43 0.30 -0.9 81,751 + Pf6N2E2_43 0.30 +0.6 81,751 + Pf6N2E2_43 0.30 -1.1 81,751 + Pf6N2E2_43 0.30 -0.6 81,752 - Pf6N2E2_43 0.31 +1.0 81,752 - Pf6N2E2_43 0.31 -0.7 81,752 - Pf6N2E2_43 0.31 -1.1 81,823 + Pf6N2E2_43 0.36 +0.3 81,823 + Pf6N2E2_43 0.36 +0.1 81,824 - Pf6N2E2_43 0.36 -0.4 81,824 - Pf6N2E2_43 0.36 -0.5 81,824 - Pf6N2E2_43 0.36 -3.1 81,824 - Pf6N2E2_43 0.36 -1.7 82,003 + Pf6N2E2_43 0.50 +0.9 82,049 - Pf6N2E2_43 0.53 -1.9
Or see this region's nucleotide sequence