Experiment: Chloride 0.5 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_22 and Pf6N2E2_23 are separated by 275 nucleotides Pf6N2E2_23 and Pf6N2E2_24 are separated by 127 nucleotides Pf6N2E2_24 and Pf6N2E2_25 are separated by 75 nucleotides
Pf6N2E2_22 - L-ornithine 5-monooxygenase (EC 1.13.12.-), PvdA of pyoverdin biosynthesis, at 56,762 to 58,096
_22
Pf6N2E2_23 - Hybrid sensory histidine kinase in two-component regulatory system with EvgA, at 58,372 to 61,572
_23
Pf6N2E2_24 - hypothetical protein, at 61,700 to 62,134
_24
Pf6N2E2_25 - DNA-binding response regulator, LuxR family, at 62,210 to 62,863
_25
Position (kb) 58
59
60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.614 kb on + strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.615 kb on - strand, within Pf6N2E2_22 at 57.650 kb on + strand, within Pf6N2E2_22 at 57.712 kb on + strand, within Pf6N2E2_22 at 57.712 kb on + strand, within Pf6N2E2_22 at 57.713 kb on - strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.899 kb on + strand, within Pf6N2E2_22 at 57.900 kb on - strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.938 kb on + strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.939 kb on - strand, within Pf6N2E2_22 at 57.980 kb on - strand at 58.031 kb on + strand at 58.031 kb on + strand at 58.031 kb on + strand at 58.032 kb on - strand at 58.032 kb on - strand at 58.092 kb on + strand at 58.093 kb on - strand at 58.094 kb on + strand at 58.094 kb on + strand at 58.095 kb on - strand at 58.095 kb on - strand at 58.129 kb on + strand at 58.129 kb on + strand at 58.130 kb on - strand at 58.222 kb on + strand at 58.277 kb on + strand at 58.277 kb on + strand at 58.277 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.317 kb on + strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.318 kb on - strand at 58.492 kb on + strand at 58.610 kb on - strand at 58.610 kb on - strand at 58.630 kb on + strand at 58.818 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.883 kb on - strand, within Pf6N2E2_23 at 58.888 kb on + strand, within Pf6N2E2_23 at 58.889 kb on - strand, within Pf6N2E2_23 at 58.889 kb on - strand, within Pf6N2E2_23 at 58.997 kb on - strand, within Pf6N2E2_23 at 59.023 kb on + strand, within Pf6N2E2_23 at 59.024 kb on - strand, within Pf6N2E2_23 at 59.041 kb on + strand, within Pf6N2E2_23 at 59.052 kb on + strand, within Pf6N2E2_23 at 59.052 kb on + strand, within Pf6N2E2_23 at 59.053 kb on - strand, within Pf6N2E2_23 at 59.405 kb on + strand, within Pf6N2E2_23 at 59.406 kb on - strand, within Pf6N2E2_23 at 59.406 kb on - strand, within Pf6N2E2_23 at 59.758 kb on + strand, within Pf6N2E2_23 at 59.759 kb on - strand, within Pf6N2E2_23 at 59.759 kb on - strand, within Pf6N2E2_23 at 59.864 kb on - strand, within Pf6N2E2_23 at 59.959 kb on + strand, within Pf6N2E2_23 at 59.959 kb on + strand, within Pf6N2E2_23 at 59.959 kb on + strand, within Pf6N2E2_23 at 59.960 kb on - strand, within Pf6N2E2_23 at 59.960 kb on - strand, within Pf6N2E2_23 at 60.014 kb on + strand, within Pf6N2E2_23 at 60.015 kb on - strand, within Pf6N2E2_23 at 60.043 kb on + strand, within Pf6N2E2_23 at 60.044 kb on - strand, within Pf6N2E2_23 at 60.044 kb on - strand, within Pf6N2E2_23 at 60.044 kb on - strand, within Pf6N2E2_23 at 60.642 kb on + strand, within Pf6N2E2_23 at 60.642 kb on + strand, within Pf6N2E2_23 at 60.642 kb on + strand, within Pf6N2E2_23 at 60.783 kb on - strand, within Pf6N2E2_23 at 60.864 kb on + strand, within Pf6N2E2_23 at 61.498 kb on - strand at 61.498 kb on - strand at 61.570 kb on + strand at 61.570 kb on + strand at 61.571 kb on - strand at 61.571 kb on - strand at 61.571 kb on - strand at 61.571 kb on - strand at 61.603 kb on + strand at 61.609 kb on + strand at 61.609 kb on + strand at 61.610 kb on - strand at 61.610 kb on - strand at 61.649 kb on + strand at 61.650 kb on - strand at 61.650 kb on - strand at 61.684 kb on + strand at 61.685 kb on - strand at 61.787 kb on + strand, within Pf6N2E2_24 at 61.787 kb on + strand, within Pf6N2E2_24 at 61.788 kb on - strand, within Pf6N2E2_24 at 61.788 kb on - strand, within Pf6N2E2_24 at 61.842 kb on - strand, within Pf6N2E2_24 at 61.842 kb on - strand, within Pf6N2E2_24 at 61.918 kb on + strand, within Pf6N2E2_24 at 61.922 kb on + strand, within Pf6N2E2_24 at 61.922 kb on + strand, within Pf6N2E2_24 at 61.922 kb on + strand, within Pf6N2E2_24 at 61.922 kb on + strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.923 kb on - strand, within Pf6N2E2_24 at 61.952 kb on + strand, within Pf6N2E2_24 at 61.952 kb on + strand, within Pf6N2E2_24 at 61.953 kb on - strand, within Pf6N2E2_24 at 62.229 kb on + strand at 62.229 kb on + strand at 62.229 kb on + strand at 62.230 kb on - strand at 62.230 kb on - strand at 62.287 kb on - strand, within Pf6N2E2_25 at 62.287 kb on - strand, within Pf6N2E2_25 at 62.305 kb on + strand, within Pf6N2E2_25 at 62.305 kb on + strand, within Pf6N2E2_25 at 62.305 kb on + strand, within Pf6N2E2_25 at 62.306 kb on - strand, within Pf6N2E2_25 at 62.306 kb on - strand, within Pf6N2E2_25
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 0.5 M remove 57,614 + Pf6N2E2_22 0.64 -0.4 57,614 + Pf6N2E2_22 0.64 +1.3 57,614 + Pf6N2E2_22 0.64 +0.0 57,615 - Pf6N2E2_22 0.64 +2.6 57,615 - Pf6N2E2_22 0.64 -0.4 57,615 - Pf6N2E2_22 0.64 -0.6 57,650 + Pf6N2E2_22 0.67 -0.6 57,712 + Pf6N2E2_22 0.71 -1.4 57,712 + Pf6N2E2_22 0.71 -0.9 57,713 - Pf6N2E2_22 0.71 +1.2 57,899 + Pf6N2E2_22 0.85 +0.5 57,899 + Pf6N2E2_22 0.85 -0.8 57,899 + Pf6N2E2_22 0.85 +0.8 57,899 + Pf6N2E2_22 0.85 +0.7 57,900 - Pf6N2E2_22 0.85 +0.1 57,938 + Pf6N2E2_22 0.88 +0.4 57,938 + Pf6N2E2_22 0.88 +0.6 57,938 + Pf6N2E2_22 0.88 +0.8 57,939 - Pf6N2E2_22 0.88 -0.7 57,939 - Pf6N2E2_22 0.88 -1.1 57,939 - Pf6N2E2_22 0.88 +0.4 57,939 - Pf6N2E2_22 0.88 -0.4 57,939 - Pf6N2E2_22 0.88 +0.6 57,939 - Pf6N2E2_22 0.88 -0.4 57,939 - Pf6N2E2_22 0.88 -0.3 57,980 - +0.8 58,031 + -0.9 58,031 + -0.2 58,031 + -0.1 58,032 - +0.7 58,032 - +0.0 58,092 + +1.5 58,093 - -0.5 58,094 + +0.4 58,094 + -0.4 58,095 - +2.8 58,095 - -0.7 58,129 + -0.5 58,129 + +1.3 58,130 - +0.3 58,222 + +0.0 58,277 + +0.6 58,277 + -0.2 58,277 + -0.4 58,317 + -0.2 58,317 + -0.9 58,317 + -0.1 58,317 + -1.2 58,317 + +1.0 58,317 + +0.3 58,317 + +0.2 58,318 - -0.9 58,318 - -1.2 58,318 - -0.7 58,318 - -0.7 58,318 - +0.6 58,492 + +0.7 58,610 - -0.6 58,610 - +0.6 58,630 + +0.9 58,818 - Pf6N2E2_23 0.14 +0.5 58,883 - Pf6N2E2_23 0.16 +1.4 58,883 - Pf6N2E2_23 0.16 +0.8 58,883 - Pf6N2E2_23 0.16 +0.9 58,888 + Pf6N2E2_23 0.16 +2.1 58,889 - Pf6N2E2_23 0.16 -0.3 58,889 - Pf6N2E2_23 0.16 -0.7 58,997 - Pf6N2E2_23 0.20 +1.2 59,023 + Pf6N2E2_23 0.20 +0.3 59,024 - Pf6N2E2_23 0.20 +0.3 59,041 + Pf6N2E2_23 0.21 +0.2 59,052 + Pf6N2E2_23 0.21 +0.1 59,052 + Pf6N2E2_23 0.21 +0.9 59,053 - Pf6N2E2_23 0.21 +0.8 59,405 + Pf6N2E2_23 0.32 +0.5 59,406 - Pf6N2E2_23 0.32 +0.0 59,406 - Pf6N2E2_23 0.32 -0.4 59,758 + Pf6N2E2_23 0.43 -0.5 59,759 - Pf6N2E2_23 0.43 -1.5 59,759 - Pf6N2E2_23 0.43 +1.1 59,864 - Pf6N2E2_23 0.47 +1.6 59,959 + Pf6N2E2_23 0.50 +0.0 59,959 + Pf6N2E2_23 0.50 -0.9 59,959 + Pf6N2E2_23 0.50 +0.6 59,960 - Pf6N2E2_23 0.50 +0.0 59,960 - Pf6N2E2_23 0.50 -0.5 60,014 + Pf6N2E2_23 0.51 +0.3 60,015 - Pf6N2E2_23 0.51 -0.1 60,043 + Pf6N2E2_23 0.52 +0.6 60,044 - Pf6N2E2_23 0.52 -0.9 60,044 - Pf6N2E2_23 0.52 -1.2 60,044 - Pf6N2E2_23 0.52 +0.9 60,642 + Pf6N2E2_23 0.71 +0.0 60,642 + Pf6N2E2_23 0.71 +0.2 60,642 + Pf6N2E2_23 0.71 -0.9 60,783 - Pf6N2E2_23 0.75 +0.0 60,864 + Pf6N2E2_23 0.78 -0.3 61,498 - -0.6 61,498 - +0.3 61,570 + -0.5 61,570 + -1.9 61,571 - +0.7 61,571 - -0.0 61,571 - -0.3 61,571 - +0.7 61,603 + +0.4 61,609 + -0.4 61,609 + -1.2 61,610 - +0.7 61,610 - +1.4 61,649 + +1.3 61,650 - -0.7 61,650 - -0.5 61,684 + +0.8 61,685 - +0.2 61,787 + Pf6N2E2_24 0.20 -0.5 61,787 + Pf6N2E2_24 0.20 +1.6 61,788 - Pf6N2E2_24 0.20 -1.2 61,788 - Pf6N2E2_24 0.20 +0.2 61,842 - Pf6N2E2_24 0.33 +1.4 61,842 - Pf6N2E2_24 0.33 -0.8 61,918 + Pf6N2E2_24 0.50 -1.1 61,922 + Pf6N2E2_24 0.51 -1.9 61,922 + Pf6N2E2_24 0.51 -0.1 61,922 + Pf6N2E2_24 0.51 +0.7 61,922 + Pf6N2E2_24 0.51 -0.7 61,923 - Pf6N2E2_24 0.51 -0.3 61,923 - Pf6N2E2_24 0.51 +0.2 61,923 - Pf6N2E2_24 0.51 +0.8 61,923 - Pf6N2E2_24 0.51 +0.1 61,923 - Pf6N2E2_24 0.51 -1.9 61,923 - Pf6N2E2_24 0.51 +0.2 61,923 - Pf6N2E2_24 0.51 +0.0 61,952 + Pf6N2E2_24 0.58 +1.4 61,952 + Pf6N2E2_24 0.58 +0.9 61,953 - Pf6N2E2_24 0.58 -1.2 62,229 + -0.3 62,229 + +0.8 62,229 + +0.2 62,230 - -0.3 62,230 - -1.7 62,287 - Pf6N2E2_25 0.12 -1.4 62,287 - Pf6N2E2_25 0.12 -0.1 62,305 + Pf6N2E2_25 0.15 +0.2 62,305 + Pf6N2E2_25 0.15 -0.8 62,305 + Pf6N2E2_25 0.15 -0.1 62,306 - Pf6N2E2_25 0.15 -0.1 62,306 - Pf6N2E2_25 0.15 +0.3
Or see this region's nucleotide sequence