Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3921

Experiment: LB, pH6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3919 and Ga0059261_3920 overlap by 4 nucleotidesGa0059261_3920 and Ga0059261_3921 overlap by 4 nucleotidesGa0059261_3921 and Ga0059261_3922 are separated by 212 nucleotides Ga0059261_3919: Ga0059261_3919 - FAD dependent oxidoreductase TIGR03364, at 4,030,432 to 4,031,571 _3919 Ga0059261_3920: Ga0059261_3920 - phosphonoacetaldehyde hydrolase (EC 3.11.1.1), at 4,031,568 to 4,032,413 _3920 Ga0059261_3921: Ga0059261_3921 - hypothetical protein, at 4,032,410 to 4,033,717 _3921 Ga0059261_3922: Ga0059261_3922 - TonB-dependent receptor, at 4,033,930 to 4,036,518 _3922 Position (kb) 4032 4033 4034Strain fitness (log2 ratio) -2 -1 0 1at 4031.413 kb on + strand, within Ga0059261_3919at 4031.413 kb on + strand, within Ga0059261_3919at 4031.413 kb on + strand, within Ga0059261_3919at 4031.413 kb on + strand, within Ga0059261_3919at 4031.413 kb on + strand, within Ga0059261_3919at 4031.413 kb on + strand, within Ga0059261_3919at 4031.413 kb on + strandat 4031.414 kb on - strand, within Ga0059261_3919at 4031.414 kb on - strand, within Ga0059261_3919at 4031.414 kb on - strand, within Ga0059261_3919at 4031.414 kb on - strand, within Ga0059261_3919at 4031.414 kb on - strand, within Ga0059261_3919at 4031.414 kb on - strand, within Ga0059261_3919at 4031.414 kb on - strand, within Ga0059261_3919at 4031.414 kb on - strand, within Ga0059261_3919at 4031.706 kb on + strand, within Ga0059261_3920at 4031.706 kb on + strand, within Ga0059261_3920at 4031.706 kb on + strand, within Ga0059261_3920at 4031.706 kb on + strand, within Ga0059261_3920at 4031.707 kb on - strand, within Ga0059261_3920at 4031.707 kb on - strand, within Ga0059261_3920at 4031.707 kb on - strand, within Ga0059261_3920at 4031.707 kb on - strand, within Ga0059261_3920at 4031.720 kb on + strand, within Ga0059261_3920at 4031.720 kb on + strand, within Ga0059261_3920at 4031.721 kb on - strand, within Ga0059261_3920at 4031.946 kb on + strand, within Ga0059261_3920at 4031.946 kb on + strand, within Ga0059261_3920at 4031.947 kb on - strand, within Ga0059261_3920at 4031.947 kb on - strand, within Ga0059261_3920at 4031.998 kb on - strand, within Ga0059261_3920at 4032.396 kb on - strandat 4032.409 kb on + strandat 4032.410 kb on - strandat 4032.503 kb on + strandat 4032.503 kb on + strandat 4032.504 kb on - strandat 4032.504 kb on - strandat 4032.504 kb on - strandat 4032.530 kb on + strandat 4032.542 kb on + strand, within Ga0059261_3921at 4032.542 kb on + strand, within Ga0059261_3921at 4032.553 kb on + strand, within Ga0059261_3921at 4032.553 kb on + strand, within Ga0059261_3921at 4032.553 kb on + strand, within Ga0059261_3921at 4032.554 kb on - strand, within Ga0059261_3921at 4032.554 kb on - strand, within Ga0059261_3921at 4032.575 kb on + strand, within Ga0059261_3921at 4032.575 kb on + strand, within Ga0059261_3921at 4032.575 kb on + strand, within Ga0059261_3921at 4032.575 kb on + strand, within Ga0059261_3921at 4032.575 kb on + strand, within Ga0059261_3921at 4032.575 kb on + strand, within Ga0059261_3921at 4032.576 kb on - strand, within Ga0059261_3921at 4032.576 kb on - strand, within Ga0059261_3921at 4032.576 kb on - strand, within Ga0059261_3921at 4032.576 kb on - strand, within Ga0059261_3921at 4032.576 kb on - strand, within Ga0059261_3921at 4032.576 kb on - strand, within Ga0059261_3921at 4032.647 kb on + strand, within Ga0059261_3921at 4032.648 kb on - strand, within Ga0059261_3921at 4032.678 kb on + strand, within Ga0059261_3921at 4032.678 kb on + strand, within Ga0059261_3921at 4032.678 kb on + strand, within Ga0059261_3921at 4032.678 kb on + strand, within Ga0059261_3921at 4032.678 kb on + strand, within Ga0059261_3921at 4032.679 kb on - strand, within Ga0059261_3921at 4032.679 kb on - strand, within Ga0059261_3921at 4032.679 kb on - strand, within Ga0059261_3921at 4032.837 kb on + strand, within Ga0059261_3921at 4032.838 kb on - strand, within Ga0059261_3921at 4032.838 kb on - strand, within Ga0059261_3921at 4032.845 kb on + strand, within Ga0059261_3921at 4032.873 kb on + strand, within Ga0059261_3921at 4032.874 kb on - strand, within Ga0059261_3921at 4033.127 kb on + strand, within Ga0059261_3921at 4033.127 kb on + strand, within Ga0059261_3921at 4033.128 kb on - strand, within Ga0059261_3921at 4033.128 kb on - strand, within Ga0059261_3921at 4033.128 kb on - strand, within Ga0059261_3921at 4033.128 kb on - strand, within Ga0059261_3921at 4033.160 kb on + strand, within Ga0059261_3921at 4033.160 kb on + strand, within Ga0059261_3921at 4033.161 kb on - strand, within Ga0059261_3921at 4033.161 kb on - strand, within Ga0059261_3921at 4033.161 kb on - strand, within Ga0059261_3921at 4033.248 kb on + strand, within Ga0059261_3921at 4033.248 kb on + strand, within Ga0059261_3921at 4033.248 kb on + strand, within Ga0059261_3921at 4033.249 kb on - strand, within Ga0059261_3921at 4033.249 kb on - strand, within Ga0059261_3921at 4033.249 kb on - strand, within Ga0059261_3921at 4033.249 kb on - strand, within Ga0059261_3921at 4033.249 kb on - strand, within Ga0059261_3921at 4033.454 kb on + strand, within Ga0059261_3921at 4033.454 kb on + strand, within Ga0059261_3921at 4033.454 kb on + strand, within Ga0059261_3921at 4033.455 kb on - strand, within Ga0059261_3921at 4033.463 kb on + strand, within Ga0059261_3921at 4033.463 kb on + strand, within Ga0059261_3921at 4033.463 kb on + strand, within Ga0059261_3921at 4033.463 kb on + strand, within Ga0059261_3921at 4033.463 kb on + strand, within Ga0059261_3921at 4033.463 kb on + strand, within Ga0059261_3921at 4033.464 kb on - strand, within Ga0059261_3921at 4033.465 kb on + strand, within Ga0059261_3921at 4033.465 kb on + strand, within Ga0059261_3921at 4033.466 kb on - strand, within Ga0059261_3921at 4033.466 kb on - strand, within Ga0059261_3921at 4033.466 kb on - strand, within Ga0059261_3921at 4033.466 kb on - strand, within Ga0059261_3921at 4033.466 kb on - strandat 4033.541 kb on + strand, within Ga0059261_3921at 4033.541 kb on + strand, within Ga0059261_3921at 4033.541 kb on + strand, within Ga0059261_3921at 4033.542 kb on - strand, within Ga0059261_3921at 4033.542 kb on - strand, within Ga0059261_3921at 4033.542 kb on - strand, within Ga0059261_3921at 4033.563 kb on - strand, within Ga0059261_3921at 4033.647 kb on - strandat 4033.647 kb on - strandat 4033.695 kb on - strandat 4033.753 kb on - strandat 4033.947 kb on + strandat 4034.014 kb on - strandat 4034.438 kb on - strand, within Ga0059261_3922at 4034.494 kb on + strand, within Ga0059261_3922at 4034.494 kb on + strand, within Ga0059261_3922at 4034.494 kb on + strand, within Ga0059261_3922at 4034.494 kb on + strand, within Ga0059261_3922at 4034.495 kb on - strand, within Ga0059261_3922at 4034.495 kb on - strand, within Ga0059261_3922at 4034.495 kb on - strand, within Ga0059261_3922at 4034.495 kb on - strand, within Ga0059261_3922at 4034.521 kb on + strand, within Ga0059261_3922at 4034.539 kb on + strand, within Ga0059261_3922at 4034.539 kb on + strand, within Ga0059261_3922at 4034.584 kb on + strand, within Ga0059261_3922at 4034.584 kb on + strand, within Ga0059261_3922at 4034.584 kb on + strand, within Ga0059261_3922at 4034.585 kb on - strand, within Ga0059261_3922at 4034.585 kb on - strand, within Ga0059261_3922at 4034.585 kb on - strand, within Ga0059261_3922at 4034.614 kb on + strand, within Ga0059261_3922at 4034.615 kb on - strand, within Ga0059261_3922at 4034.615 kb on - strand, within Ga0059261_3922at 4034.615 kb on - strand, within Ga0059261_3922at 4034.671 kb on + strand, within Ga0059261_3922at 4034.671 kb on + strand, within Ga0059261_3922at 4034.671 kb on + strand, within Ga0059261_3922at 4034.672 kb on - strand, within Ga0059261_3922at 4034.672 kb on - strand, within Ga0059261_3922at 4034.672 kb on - strand, within Ga0059261_3922at 4034.672 kb on - strand, within Ga0059261_3922at 4034.716 kb on + strand, within Ga0059261_3922at 4034.716 kb on + strand, within Ga0059261_3922at 4034.716 kb on + strand, within Ga0059261_3922at 4034.717 kb on - strand, within Ga0059261_3922

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH6
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4,031,413 + Ga0059261_3919 0.86 +1.0
4,031,413 + Ga0059261_3919 0.86 +0.5
4,031,413 + Ga0059261_3919 0.86 -0.3
4,031,413 + Ga0059261_3919 0.86 +0.1
4,031,413 + Ga0059261_3919 0.86 +0.2
4,031,413 + Ga0059261_3919 0.86 +0.9
4,031,413 + -0.3
4,031,414 - Ga0059261_3919 0.86 +0.9
4,031,414 - Ga0059261_3919 0.86 +0.6
4,031,414 - Ga0059261_3919 0.86 -0.9
4,031,414 - Ga0059261_3919 0.86 -0.3
4,031,414 - Ga0059261_3919 0.86 +1.3
4,031,414 - Ga0059261_3919 0.86 +0.4
4,031,414 - Ga0059261_3919 0.86 -0.5
4,031,414 - Ga0059261_3919 0.86 -0.9
4,031,706 + Ga0059261_3920 0.16 +0.7
4,031,706 + Ga0059261_3920 0.16 -0.6
4,031,706 + Ga0059261_3920 0.16 +0.1
4,031,706 + Ga0059261_3920 0.16 +0.7
4,031,707 - Ga0059261_3920 0.16 +0.7
4,031,707 - Ga0059261_3920 0.16 -1.4
4,031,707 - Ga0059261_3920 0.16 +0.2
4,031,707 - Ga0059261_3920 0.16 +0.2
4,031,720 + Ga0059261_3920 0.18 -0.6
4,031,720 + Ga0059261_3920 0.18 +1.4
4,031,721 - Ga0059261_3920 0.18 +0.4
4,031,946 + Ga0059261_3920 0.45 -1.3
4,031,946 + Ga0059261_3920 0.45 -0.3
4,031,947 - Ga0059261_3920 0.45 -0.6
4,031,947 - Ga0059261_3920 0.45 +0.4
4,031,998 - Ga0059261_3920 0.51 -0.3
4,032,396 - -1.7
4,032,409 + +1.7
4,032,410 - -0.4
4,032,503 + +0.1
4,032,503 + +0.0
4,032,504 - +1.1
4,032,504 - -1.1
4,032,504 - -2.2
4,032,530 + +0.5
4,032,542 + Ga0059261_3921 0.10 -0.9
4,032,542 + Ga0059261_3921 0.10 +1.6
4,032,553 + Ga0059261_3921 0.11 -0.2
4,032,553 + Ga0059261_3921 0.11 -0.8
4,032,553 + Ga0059261_3921 0.11 +0.4
4,032,554 - Ga0059261_3921 0.11 +0.1
4,032,554 - Ga0059261_3921 0.11 -1.0
4,032,575 + Ga0059261_3921 0.13 -0.1
4,032,575 + Ga0059261_3921 0.13 -0.2
4,032,575 + Ga0059261_3921 0.13 -0.3
4,032,575 + Ga0059261_3921 0.13 +0.5
4,032,575 + Ga0059261_3921 0.13 -0.3
4,032,575 + Ga0059261_3921 0.13 -0.2
4,032,576 - Ga0059261_3921 0.13 +0.4
4,032,576 - Ga0059261_3921 0.13 +0.4
4,032,576 - Ga0059261_3921 0.13 -0.1
4,032,576 - Ga0059261_3921 0.13 +0.0
4,032,576 - Ga0059261_3921 0.13 -0.5
4,032,576 - Ga0059261_3921 0.13 +0.5
4,032,647 + Ga0059261_3921 0.18 -0.1
4,032,648 - Ga0059261_3921 0.18 -0.6
4,032,678 + Ga0059261_3921 0.20 +1.3
4,032,678 + Ga0059261_3921 0.20 -1.3
4,032,678 + Ga0059261_3921 0.20 -0.1
4,032,678 + Ga0059261_3921 0.20 -0.2
4,032,678 + Ga0059261_3921 0.20 -0.7
4,032,679 - Ga0059261_3921 0.21 -1.0
4,032,679 - Ga0059261_3921 0.21 +0.4
4,032,679 - Ga0059261_3921 0.21 -0.1
4,032,837 + Ga0059261_3921 0.33 -0.4
4,032,838 - Ga0059261_3921 0.33 +0.4
4,032,838 - Ga0059261_3921 0.33 +0.4
4,032,845 + Ga0059261_3921 0.33 -0.4
4,032,873 + Ga0059261_3921 0.35 +0.0
4,032,874 - Ga0059261_3921 0.35 -1.3
4,033,127 + Ga0059261_3921 0.55 +0.4
4,033,127 + Ga0059261_3921 0.55 -0.2
4,033,128 - Ga0059261_3921 0.55 -0.5
4,033,128 - Ga0059261_3921 0.55 -0.6
4,033,128 - Ga0059261_3921 0.55 +0.3
4,033,128 - Ga0059261_3921 0.55 -0.7
4,033,160 + Ga0059261_3921 0.57 -0.9
4,033,160 + Ga0059261_3921 0.57 +0.1
4,033,161 - Ga0059261_3921 0.57 +0.7
4,033,161 - Ga0059261_3921 0.57 -0.3
4,033,161 - Ga0059261_3921 0.57 -0.5
4,033,248 + Ga0059261_3921 0.64 +0.4
4,033,248 + Ga0059261_3921 0.64 -0.1
4,033,248 + Ga0059261_3921 0.64 -1.3
4,033,249 - Ga0059261_3921 0.64 -0.3
4,033,249 - Ga0059261_3921 0.64 -0.3
4,033,249 - Ga0059261_3921 0.64 -0.9
4,033,249 - Ga0059261_3921 0.64 -0.2
4,033,249 - Ga0059261_3921 0.64 -0.1
4,033,454 + Ga0059261_3921 0.80 -0.4
4,033,454 + Ga0059261_3921 0.80 +0.3
4,033,454 + Ga0059261_3921 0.80 +0.3
4,033,455 - Ga0059261_3921 0.80 -0.6
4,033,463 + Ga0059261_3921 0.81 -0.9
4,033,463 + Ga0059261_3921 0.81 -0.9
4,033,463 + Ga0059261_3921 0.81 -0.9
4,033,463 + Ga0059261_3921 0.81 +0.4
4,033,463 + Ga0059261_3921 0.81 +0.2
4,033,463 + Ga0059261_3921 0.81 +1.7
4,033,464 - Ga0059261_3921 0.81 -0.3
4,033,465 + Ga0059261_3921 0.81 +0.5
4,033,465 + Ga0059261_3921 0.81 +0.3
4,033,466 - Ga0059261_3921 0.81 +0.4
4,033,466 - Ga0059261_3921 0.81 +1.6
4,033,466 - Ga0059261_3921 0.81 -0.7
4,033,466 - Ga0059261_3921 0.81 -1.9
4,033,466 - -0.3
4,033,541 + Ga0059261_3921 0.86 -0.6
4,033,541 + Ga0059261_3921 0.86 -0.1
4,033,541 + Ga0059261_3921 0.86 +0.5
4,033,542 - Ga0059261_3921 0.87 -1.2
4,033,542 - Ga0059261_3921 0.87 -0.7
4,033,542 - Ga0059261_3921 0.87 -1.3
4,033,563 - Ga0059261_3921 0.88 -0.1
4,033,647 - +0.5
4,033,647 - -0.8
4,033,695 - +0.1
4,033,753 - +0.7
4,033,947 + +0.2
4,034,014 - -0.9
4,034,438 - Ga0059261_3922 0.20 -0.1
4,034,494 + Ga0059261_3922 0.22 +0.1
4,034,494 + Ga0059261_3922 0.22 +1.0
4,034,494 + Ga0059261_3922 0.22 +0.4
4,034,494 + Ga0059261_3922 0.22 -0.9
4,034,495 - Ga0059261_3922 0.22 -0.3
4,034,495 - Ga0059261_3922 0.22 -0.6
4,034,495 - Ga0059261_3922 0.22 -0.3
4,034,495 - Ga0059261_3922 0.22 +1.3
4,034,521 + Ga0059261_3922 0.23 -0.3
4,034,539 + Ga0059261_3922 0.24 +0.1
4,034,539 + Ga0059261_3922 0.24 -0.5
4,034,584 + Ga0059261_3922 0.25 +0.3
4,034,584 + Ga0059261_3922 0.25 -0.3
4,034,584 + Ga0059261_3922 0.25 -0.2
4,034,585 - Ga0059261_3922 0.25 -1.6
4,034,585 - Ga0059261_3922 0.25 -0.6
4,034,585 - Ga0059261_3922 0.25 +1.0
4,034,614 + Ga0059261_3922 0.26 +0.2
4,034,615 - Ga0059261_3922 0.26 -1.5
4,034,615 - Ga0059261_3922 0.26 +0.1
4,034,615 - Ga0059261_3922 0.26 -0.8
4,034,671 + Ga0059261_3922 0.29 -1.3
4,034,671 + Ga0059261_3922 0.29 +0.2
4,034,671 + Ga0059261_3922 0.29 +0.2
4,034,672 - Ga0059261_3922 0.29 +0.1
4,034,672 - Ga0059261_3922 0.29 +1.3
4,034,672 - Ga0059261_3922 0.29 -2.6
4,034,672 - Ga0059261_3922 0.29 -1.0
4,034,716 + Ga0059261_3922 0.30 -0.3
4,034,716 + Ga0059261_3922 0.30 -0.2
4,034,716 + Ga0059261_3922 0.30 -0.3
4,034,717 - Ga0059261_3922 0.30 +0.9

Or see this region's nucleotide sequence