Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19120

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19115 and CSW01_19120 are separated by 151 nucleotidesCSW01_19120 and CSW01_19125 overlap by 4 nucleotidesCSW01_19125 and CSW01_19130 are separated by 51 nucleotides CSW01_19115: CSW01_19115 - AraC family transcriptional regulator, at 953,320 to 954,153 _19115 CSW01_19120: CSW01_19120 - branched-chain amino acid ABC transporter permease, at 954,305 to 955,024 _19120 CSW01_19125: CSW01_19125 - branched-chain amino acid ABC transporter, at 955,021 to 955,338 _19125 CSW01_19130: CSW01_19130 - FAA hydrolase family protein, at 955,390 to 956,004 _19130 Position (kb) 954 955 956Strain fitness (log2 ratio) -2 -1 0 1 2 3at 953.387 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.387 kb on + strandat 953.395 kb on - strandat 953.395 kb on - strandat 953.397 kb on + strandat 953.409 kb on + strand, within CSW01_19115at 953.438 kb on + strand, within CSW01_19115at 953.446 kb on + strand, within CSW01_19115at 953.453 kb on + strand, within CSW01_19115at 953.453 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.455 kb on - strand, within CSW01_19115at 953.515 kb on + strand, within CSW01_19115at 953.573 kb on - strand, within CSW01_19115at 953.587 kb on - strand, within CSW01_19115at 953.788 kb on - strand, within CSW01_19115at 953.990 kb on - strand, within CSW01_19115at 954.015 kb on - strand, within CSW01_19115at 954.029 kb on + strand, within CSW01_19115at 954.040 kb on + strand, within CSW01_19115at 954.051 kb on + strand, within CSW01_19115at 954.051 kb on + strand, within CSW01_19115at 954.128 kb on + strandat 954.128 kb on + strandat 954.136 kb on - strandat 954.136 kb on - strandat 954.136 kb on - strandat 954.197 kb on - strandat 954.208 kb on + strandat 954.216 kb on - strandat 954.216 kb on - strandat 954.216 kb on - strandat 954.220 kb on + strandat 954.248 kb on - strandat 954.301 kb on + strandat 954.317 kb on + strandat 954.342 kb on + strandat 954.382 kb on + strand, within CSW01_19120at 954.398 kb on - strand, within CSW01_19120at 954.398 kb on - strand, within CSW01_19120at 954.406 kb on - strand, within CSW01_19120at 954.481 kb on + strand, within CSW01_19120at 954.500 kb on - strand, within CSW01_19120at 954.544 kb on - strand, within CSW01_19120at 954.602 kb on - strand, within CSW01_19120at 954.659 kb on - strand, within CSW01_19120at 954.671 kb on - strand, within CSW01_19120at 954.671 kb on - strand, within CSW01_19120at 954.671 kb on - strand, within CSW01_19120at 954.673 kb on - strand, within CSW01_19120at 954.729 kb on + strand, within CSW01_19120at 954.729 kb on + strand, within CSW01_19120at 954.729 kb on + strand, within CSW01_19120at 954.734 kb on + strand, within CSW01_19120at 954.788 kb on + strand, within CSW01_19120at 954.804 kb on + strand, within CSW01_19120at 954.822 kb on - strand, within CSW01_19120at 954.918 kb on - strand, within CSW01_19120at 954.920 kb on + strand, within CSW01_19120at 954.920 kb on + strand, within CSW01_19120at 954.920 kb on + strand, within CSW01_19120at 954.928 kb on - strand, within CSW01_19120at 954.928 kb on - strand, within CSW01_19120at 954.928 kb on - strand, within CSW01_19120at 954.959 kb on - strandat 955.136 kb on + strand, within CSW01_19125at 955.247 kb on - strand, within CSW01_19125at 955.286 kb on - strand, within CSW01_19125at 955.296 kb on - strand, within CSW01_19125at 955.312 kb on - strandat 955.319 kb on + strandat 955.322 kb on - strandat 955.322 kb on - strandat 955.333 kb on + strandat 955.361 kb on - strandat 955.361 kb on - strandat 955.365 kb on - strandat 955.415 kb on + strandat 955.425 kb on + strandat 955.428 kb on - strandat 955.433 kb on - strandat 955.480 kb on + strand, within CSW01_19130at 955.511 kb on - strand, within CSW01_19130at 955.604 kb on + strand, within CSW01_19130at 955.604 kb on - strand, within CSW01_19130at 955.682 kb on - strand, within CSW01_19130at 955.723 kb on - strand, within CSW01_19130at 955.723 kb on - strand, within CSW01_19130at 955.732 kb on + strand, within CSW01_19130at 955.733 kb on - strand, within CSW01_19130at 955.735 kb on - strand, within CSW01_19130at 955.815 kb on - strand, within CSW01_19130at 955.852 kb on - strand, within CSW01_19130at 955.868 kb on + strand, within CSW01_19130at 955.868 kb on + strand, within CSW01_19130at 955.876 kb on - strand, within CSW01_19130at 955.917 kb on - strand, within CSW01_19130at 955.942 kb on - strand, within CSW01_19130at 956.000 kb on - strandat 956.011 kb on + strandat 956.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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953,387 + -0.2
953,387 + +0.5
953,387 + -0.1
953,387 + -0.0
953,395 - -0.2
953,395 - +0.1
953,397 + +0.1
953,409 + CSW01_19115 0.11 -0.7
953,438 + CSW01_19115 0.14 -0.3
953,446 + CSW01_19115 0.15 +0.3
953,453 + CSW01_19115 0.16 +1.4
953,453 - CSW01_19115 0.16 +0.6
953,455 - CSW01_19115 0.16 -0.7
953,455 - CSW01_19115 0.16 +0.2
953,455 - CSW01_19115 0.16 -0.4
953,515 + CSW01_19115 0.23 +1.0
953,573 - CSW01_19115 0.30 +0.1
953,587 - CSW01_19115 0.32 +0.7
953,788 - CSW01_19115 0.56 -0.3
953,990 - CSW01_19115 0.80 +0.5
954,015 - CSW01_19115 0.83 +0.2
954,029 + CSW01_19115 0.85 +1.6
954,040 + CSW01_19115 0.86 +0.2
954,051 + CSW01_19115 0.88 +0.3
954,051 + CSW01_19115 0.88 -0.2
954,128 + -0.3
954,128 + +0.9
954,136 - +1.4
954,136 - +0.3
954,136 - +0.7
954,197 - +0.6
954,208 + +0.4
954,216 - +0.5
954,216 - +0.4
954,216 - -0.7
954,220 + +0.1
954,248 - -0.1
954,301 + +0.8
954,317 + +0.4
954,342 + +0.4
954,382 + CSW01_19120 0.11 -0.7
954,398 - CSW01_19120 0.13 +0.3
954,398 - CSW01_19120 0.13 +0.1
954,406 - CSW01_19120 0.14 -1.2
954,481 + CSW01_19120 0.24 +0.1
954,500 - CSW01_19120 0.27 +1.0
954,544 - CSW01_19120 0.33 -0.1
954,602 - CSW01_19120 0.41 -0.5
954,659 - CSW01_19120 0.49 +0.8
954,671 - CSW01_19120 0.51 +0.5
954,671 - CSW01_19120 0.51 +0.1
954,671 - CSW01_19120 0.51 +1.0
954,673 - CSW01_19120 0.51 +2.4
954,729 + CSW01_19120 0.59 -0.1
954,729 + CSW01_19120 0.59 +0.3
954,729 + CSW01_19120 0.59 +0.4
954,734 + CSW01_19120 0.60 +0.7
954,788 + CSW01_19120 0.67 -0.1
954,804 + CSW01_19120 0.69 -0.7
954,822 - CSW01_19120 0.72 -0.2
954,918 - CSW01_19120 0.85 -0.7
954,920 + CSW01_19120 0.85 +0.2
954,920 + CSW01_19120 0.85 +2.6
954,920 + CSW01_19120 0.85 -1.9
954,928 - CSW01_19120 0.87 +0.9
954,928 - CSW01_19120 0.87 +0.1
954,928 - CSW01_19120 0.87 -0.5
954,959 - +0.8
955,136 + CSW01_19125 0.36 +0.4
955,247 - CSW01_19125 0.71 +1.2
955,286 - CSW01_19125 0.83 +0.9
955,296 - CSW01_19125 0.86 +0.5
955,312 - -0.1
955,319 + +0.3
955,322 - -0.5
955,322 - -1.1
955,333 + -1.5
955,361 - +0.2
955,361 - +0.7
955,365 - -1.4
955,415 + -0.4
955,425 + +0.2
955,428 - -1.1
955,433 - +0.1
955,480 + CSW01_19130 0.15 -0.2
955,511 - CSW01_19130 0.20 -0.8
955,604 + CSW01_19130 0.35 +0.1
955,604 - CSW01_19130 0.35 +2.9
955,682 - CSW01_19130 0.47 -2.2
955,723 - CSW01_19130 0.54 +0.3
955,723 - CSW01_19130 0.54 -0.3
955,732 + CSW01_19130 0.56 +0.8
955,733 - CSW01_19130 0.56 -0.6
955,735 - CSW01_19130 0.56 +0.2
955,815 - CSW01_19130 0.69 -1.0
955,852 - CSW01_19130 0.75 -0.6
955,868 + CSW01_19130 0.78 +0.8
955,868 + CSW01_19130 0.78 -0.3
955,876 - CSW01_19130 0.79 +0.8
955,917 - CSW01_19130 0.86 -0.1
955,942 - CSW01_19130 0.90 -0.4
956,000 - -0.0
956,011 + +0.3
956,019 - +0.3

Or see this region's nucleotide sequence