Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18960

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18950 and CSW01_18955 are separated by 2 nucleotidesCSW01_18955 and CSW01_18960 are separated by 174 nucleotidesCSW01_18960 and CSW01_18965 are separated by 137 nucleotidesCSW01_18965 and CSW01_18970 are separated by 511 nucleotides CSW01_18950: CSW01_18950 - GGDEF domain-containing protein, at 912,593 to 913,783 _18950 CSW01_18955: CSW01_18955 - hypothetical protein, at 913,786 to 914,082 _18955 CSW01_18960: CSW01_18960 - quercetin 2,3-dioxygenase, at 914,257 to 915,105 _18960 CSW01_18965: CSW01_18965 - DUF1255 domain-containing protein, at 915,243 to 915,557 _18965 CSW01_18970: CSW01_18970 - DUF2850 domain-containing protein, at 916,069 to 916,509 _18970 Position (kb) 914 915 916Strain fitness (log2 ratio) -2 -1 0 1 2at 913.272 kb on + strand, within CSW01_18950at 913.280 kb on - strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.332 kb on + strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.340 kb on - strand, within CSW01_18950at 913.465 kb on + strand, within CSW01_18950at 913.465 kb on + strand, within CSW01_18950at 913.465 kb on + strand, within CSW01_18950at 913.465 kb on + strand, within CSW01_18950at 913.473 kb on - strand, within CSW01_18950at 913.473 kb on - strand, within CSW01_18950at 913.473 kb on - strand, within CSW01_18950at 913.473 kb on - strand, within CSW01_18950at 913.505 kb on - strand, within CSW01_18950at 913.542 kb on - strand, within CSW01_18950at 913.573 kb on + strand, within CSW01_18950at 913.575 kb on + strand, within CSW01_18950at 913.581 kb on - strand, within CSW01_18950at 913.581 kb on - strand, within CSW01_18950at 913.583 kb on - strand, within CSW01_18950at 913.583 kb on - strand, within CSW01_18950at 913.619 kb on + strand, within CSW01_18950at 913.627 kb on - strand, within CSW01_18950at 913.628 kb on - strand, within CSW01_18950at 913.637 kb on + strand, within CSW01_18950at 913.661 kb on - strand, within CSW01_18950at 913.724 kb on + strandat 913.782 kb on + strandat 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.856 kb on + strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.864 kb on - strand, within CSW01_18955at 913.952 kb on + strand, within CSW01_18955at 913.952 kb on + strand, within CSW01_18955at 913.960 kb on - strand, within CSW01_18955at 913.970 kb on - strand, within CSW01_18955at 913.996 kb on - strand, within CSW01_18955at 914.134 kb on + strandat 914.134 kb on + strandat 914.237 kb on + strandat 914.245 kb on - strandat 914.246 kb on + strandat 914.261 kb on - strandat 914.268 kb on - strandat 914.306 kb on - strandat 914.306 kb on - strandat 914.431 kb on + strand, within CSW01_18960at 914.563 kb on - strand, within CSW01_18960at 914.565 kb on - strand, within CSW01_18960at 914.615 kb on + strand, within CSW01_18960at 914.623 kb on - strand, within CSW01_18960at 914.707 kb on + strand, within CSW01_18960at 914.707 kb on + strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.715 kb on - strand, within CSW01_18960at 914.739 kb on + strand, within CSW01_18960at 914.746 kb on - strand, within CSW01_18960at 914.774 kb on + strand, within CSW01_18960at 914.777 kb on - strand, within CSW01_18960at 914.782 kb on - strand, within CSW01_18960at 914.891 kb on + strand, within CSW01_18960at 914.907 kb on - strand, within CSW01_18960at 914.909 kb on + strand, within CSW01_18960at 914.912 kb on - strand, within CSW01_18960at 914.941 kb on + strand, within CSW01_18960at 914.944 kb on - strand, within CSW01_18960at 914.954 kb on + strand, within CSW01_18960at 914.962 kb on + strand, within CSW01_18960at 915.315 kb on - strand, within CSW01_18965at 915.341 kb on + strand, within CSW01_18965at 915.369 kb on + strand, within CSW01_18965at 915.385 kb on + strand, within CSW01_18965at 915.385 kb on + strand, within CSW01_18965at 915.393 kb on - strand, within CSW01_18965at 915.393 kb on - strand, within CSW01_18965at 915.429 kb on + strand, within CSW01_18965at 915.429 kb on + strand, within CSW01_18965at 915.454 kb on + strand, within CSW01_18965at 915.462 kb on + strand, within CSW01_18965at 915.462 kb on - strand, within CSW01_18965at 915.499 kb on - strand, within CSW01_18965at 915.554 kb on - strandat 915.586 kb on - strandat 915.590 kb on + strandat 915.632 kb on + strandat 915.646 kb on + strandat 915.654 kb on - strandat 915.654 kb on - strandat 915.672 kb on - strandat 915.673 kb on - strandat 915.781 kb on - strandat 915.803 kb on - strandat 915.875 kb on - strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 915.999 kb on + strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.007 kb on - strandat 916.012 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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913,272 + CSW01_18950 0.57 +1.0
913,280 - CSW01_18950 0.58 -1.5
913,332 + CSW01_18950 0.62 -0.0
913,332 + CSW01_18950 0.62 +1.4
913,332 + CSW01_18950 0.62 +0.4
913,332 + CSW01_18950 0.62 -0.1
913,332 + CSW01_18950 0.62 +0.3
913,332 + CSW01_18950 0.62 +0.3
913,332 + CSW01_18950 0.62 +0.4
913,332 + CSW01_18950 0.62 +1.2
913,332 + CSW01_18950 0.62 +0.4
913,332 + CSW01_18950 0.62 +0.1
913,340 - CSW01_18950 0.63 +0.7
913,340 - CSW01_18950 0.63 +1.6
913,340 - CSW01_18950 0.63 +0.0
913,340 - CSW01_18950 0.63 -0.1
913,340 - CSW01_18950 0.63 +0.9
913,465 + CSW01_18950 0.73 +1.5
913,465 + CSW01_18950 0.73 -0.7
913,465 + CSW01_18950 0.73 -0.5
913,465 + CSW01_18950 0.73 +0.3
913,473 - CSW01_18950 0.74 +0.6
913,473 - CSW01_18950 0.74 +0.8
913,473 - CSW01_18950 0.74 +0.4
913,473 - CSW01_18950 0.74 +1.2
913,505 - CSW01_18950 0.77 +0.5
913,542 - CSW01_18950 0.80 +0.4
913,573 + CSW01_18950 0.82 -0.8
913,575 + CSW01_18950 0.82 +0.2
913,581 - CSW01_18950 0.83 +0.7
913,581 - CSW01_18950 0.83 -0.6
913,583 - CSW01_18950 0.83 +0.2
913,583 - CSW01_18950 0.83 +0.4
913,619 + CSW01_18950 0.86 +2.5
913,627 - CSW01_18950 0.87 +1.3
913,628 - CSW01_18950 0.87 +0.1
913,637 + CSW01_18950 0.88 -0.7
913,661 - CSW01_18950 0.90 +0.2
913,724 + +0.2
913,782 + -0.1
913,856 + CSW01_18955 0.24 +0.1
913,856 + CSW01_18955 0.24 +0.1
913,856 + CSW01_18955 0.24 +0.1
913,856 + CSW01_18955 0.24 -0.0
913,856 + CSW01_18955 0.24 -1.2
913,856 + CSW01_18955 0.24 +0.3
913,856 + CSW01_18955 0.24 +0.3
913,856 + CSW01_18955 0.24 -0.4
913,864 - CSW01_18955 0.26 +0.5
913,864 - CSW01_18955 0.26 -0.2
913,864 - CSW01_18955 0.26 -0.6
913,864 - CSW01_18955 0.26 -1.2
913,864 - CSW01_18955 0.26 +0.5
913,864 - CSW01_18955 0.26 -0.1
913,864 - CSW01_18955 0.26 +0.6
913,864 - CSW01_18955 0.26 +0.5
913,864 - CSW01_18955 0.26 -0.9
913,952 + CSW01_18955 0.56 +1.5
913,952 + CSW01_18955 0.56 +0.7
913,960 - CSW01_18955 0.59 -0.8
913,970 - CSW01_18955 0.62 -2.1
913,996 - CSW01_18955 0.71 -0.8
914,134 + +1.7
914,134 + +0.4
914,237 + +0.9
914,245 - +0.1
914,246 + -0.3
914,261 - -0.9
914,268 - -1.9
914,306 - -0.5
914,306 - -0.3
914,431 + CSW01_18960 0.20 +1.3
914,563 - CSW01_18960 0.36 +0.3
914,565 - CSW01_18960 0.36 +1.7
914,615 + CSW01_18960 0.42 +0.9
914,623 - CSW01_18960 0.43 +0.7
914,707 + CSW01_18960 0.53 +0.1
914,707 + CSW01_18960 0.53 +1.0
914,715 - CSW01_18960 0.54 +0.4
914,715 - CSW01_18960 0.54 +0.7
914,715 - CSW01_18960 0.54 +0.3
914,739 + CSW01_18960 0.57 -1.2
914,746 - CSW01_18960 0.58 +0.6
914,774 + CSW01_18960 0.61 +0.1
914,777 - CSW01_18960 0.61 +1.0
914,782 - CSW01_18960 0.62 -0.0
914,891 + CSW01_18960 0.75 +0.1
914,907 - CSW01_18960 0.77 -0.4
914,909 + CSW01_18960 0.77 +0.8
914,912 - CSW01_18960 0.77 -1.8
914,941 + CSW01_18960 0.81 -0.7
914,944 - CSW01_18960 0.81 +1.3
914,954 + CSW01_18960 0.82 +0.2
914,962 + CSW01_18960 0.83 +0.0
915,315 - CSW01_18965 0.23 -0.8
915,341 + CSW01_18965 0.31 +0.3
915,369 + CSW01_18965 0.40 -1.1
915,385 + CSW01_18965 0.45 -0.2
915,385 + CSW01_18965 0.45 +0.3
915,393 - CSW01_18965 0.48 +0.4
915,393 - CSW01_18965 0.48 -0.8
915,429 + CSW01_18965 0.59 +0.4
915,429 + CSW01_18965 0.59 +0.1
915,454 + CSW01_18965 0.67 +0.2
915,462 + CSW01_18965 0.70 +0.4
915,462 - CSW01_18965 0.70 -0.0
915,499 - CSW01_18965 0.81 +0.8
915,554 - +0.3
915,586 - +0.1
915,590 + -0.1
915,632 + -0.1
915,646 + +0.1
915,654 - -0.1
915,654 - +1.6
915,672 - +0.2
915,673 - +0.3
915,781 - +0.2
915,803 - +0.9
915,875 - +1.6
915,999 + +0.3
915,999 + +1.7
915,999 + +0.1
915,999 + -0.7
915,999 + +0.1
916,007 - -0.7
916,007 - +0.6
916,007 - -0.5
916,007 - +1.8
916,007 - -0.7
916,012 - -0.1

Or see this region's nucleotide sequence