Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18455

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18450 and CSW01_18455 are separated by 80 nucleotidesCSW01_18455 and CSW01_18460 overlap by 15 nucleotidesCSW01_18460 and CSW01_18465 are separated by 195 nucleotides CSW01_18450: CSW01_18450 - hypothetical protein, at 814,184 to 815,464 _18450 CSW01_18455: CSW01_18455 - hemagglutinin/proteinase, at 815,545 to 817,374 _18455 CSW01_18460: CSW01_18460 - hypothetical protein, at 817,360 to 817,599 _18460 CSW01_18465: CSW01_18465 - outer membrane protein W, at 817,795 to 818,448 _18465 Position (kb) 815 816 817 818Strain fitness (log2 ratio) -2 -1 0 1at 814.688 kb on + strand, within CSW01_18450at 814.719 kb on - strand, within CSW01_18450at 814.806 kb on - strand, within CSW01_18450at 814.806 kb on - strand, within CSW01_18450at 814.806 kb on - strand, within CSW01_18450at 814.806 kb on - strand, within CSW01_18450at 814.858 kb on - strand, within CSW01_18450at 814.864 kb on - strand, within CSW01_18450at 814.877 kb on + strand, within CSW01_18450at 814.921 kb on + strand, within CSW01_18450at 814.926 kb on + strand, within CSW01_18450at 814.941 kb on - strand, within CSW01_18450at 815.098 kb on + strand, within CSW01_18450at 815.285 kb on - strand, within CSW01_18450at 815.413 kb on + strandat 815.501 kb on + strandat 815.501 kb on + strandat 815.509 kb on - strandat 815.626 kb on + strandat 815.745 kb on + strand, within CSW01_18455at 815.745 kb on + strand, within CSW01_18455at 815.753 kb on - strand, within CSW01_18455at 815.753 kb on - strand, within CSW01_18455at 815.753 kb on - strand, within CSW01_18455at 815.769 kb on + strand, within CSW01_18455at 815.777 kb on - strand, within CSW01_18455at 815.777 kb on - strand, within CSW01_18455at 815.777 kb on - strand, within CSW01_18455at 815.793 kb on + strand, within CSW01_18455at 815.806 kb on + strand, within CSW01_18455at 815.814 kb on - strand, within CSW01_18455at 815.926 kb on - strand, within CSW01_18455at 815.942 kb on + strand, within CSW01_18455at 816.018 kb on + strand, within CSW01_18455at 816.086 kb on + strand, within CSW01_18455at 816.102 kb on + strand, within CSW01_18455at 816.110 kb on - strand, within CSW01_18455at 816.110 kb on - strand, within CSW01_18455at 816.113 kb on + strand, within CSW01_18455at 816.121 kb on - strand, within CSW01_18455at 816.121 kb on - strand, within CSW01_18455at 816.175 kb on - strand, within CSW01_18455at 816.187 kb on - strand, within CSW01_18455at 816.240 kb on + strand, within CSW01_18455at 816.289 kb on + strand, within CSW01_18455at 816.332 kb on - strand, within CSW01_18455at 816.550 kb on - strand, within CSW01_18455at 816.571 kb on - strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.583 kb on + strand, within CSW01_18455at 816.588 kb on + strand, within CSW01_18455at 816.591 kb on - strand, within CSW01_18455at 816.591 kb on - strand, within CSW01_18455at 816.591 kb on - strand, within CSW01_18455at 816.591 kb on - strand, within CSW01_18455at 816.668 kb on + strand, within CSW01_18455at 816.676 kb on - strand, within CSW01_18455at 816.689 kb on + strand, within CSW01_18455at 816.811 kb on + strand, within CSW01_18455at 816.819 kb on + strand, within CSW01_18455at 816.828 kb on + strand, within CSW01_18455at 816.907 kb on - strand, within CSW01_18455at 816.926 kb on - strand, within CSW01_18455at 816.942 kb on - strand, within CSW01_18455at 817.007 kb on - strand, within CSW01_18455at 817.030 kb on - strand, within CSW01_18455at 817.044 kb on - strand, within CSW01_18455at 817.078 kb on + strand, within CSW01_18455at 817.086 kb on - strand, within CSW01_18455at 817.230 kb on + strandat 817.230 kb on + strandat 817.235 kb on + strandat 817.235 kb on + strandat 817.243 kb on - strandat 817.338 kb on + strandat 817.341 kb on - strandat 817.341 kb on - strandat 817.346 kb on - strandat 817.414 kb on - strand, within CSW01_18460at 817.414 kb on - strand, within CSW01_18460at 817.464 kb on + strand, within CSW01_18460at 817.677 kb on + strandat 817.871 kb on + strand, within CSW01_18465at 817.871 kb on + strand, within CSW01_18465at 817.916 kb on - strand, within CSW01_18465at 817.997 kb on - strand, within CSW01_18465at 818.059 kb on - strand, within CSW01_18465at 818.064 kb on - strand, within CSW01_18465at 818.073 kb on - strand, within CSW01_18465at 818.157 kb on + strand, within CSW01_18465at 818.162 kb on + strand, within CSW01_18465at 818.170 kb on - strand, within CSW01_18465at 818.175 kb on - strand, within CSW01_18465at 818.175 kb on - strand, within CSW01_18465at 818.193 kb on - strand, within CSW01_18465at 818.223 kb on + strand, within CSW01_18465at 818.231 kb on - strand, within CSW01_18465at 818.231 kb on - strand, within CSW01_18465at 818.248 kb on + strand, within CSW01_18465at 818.255 kb on - strand, within CSW01_18465at 818.257 kb on - strand, within CSW01_18465at 818.259 kb on + strand, within CSW01_18465at 818.260 kb on + strand, within CSW01_18465at 818.267 kb on - strand, within CSW01_18465at 818.306 kb on - strand, within CSW01_18465at 818.308 kb on + strand, within CSW01_18465at 818.308 kb on - strand, within CSW01_18465at 818.343 kb on - strand, within CSW01_18465at 818.355 kb on - strand, within CSW01_18465at 818.364 kb on + strand, within CSW01_18465at 818.364 kb on + strand, within CSW01_18465at 818.372 kb on - strand, within CSW01_18465

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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814,688 + CSW01_18450 0.39 -0.3
814,719 - CSW01_18450 0.42 +0.1
814,806 - CSW01_18450 0.49 +0.5
814,806 - CSW01_18450 0.49 +0.0
814,806 - CSW01_18450 0.49 -0.3
814,806 - CSW01_18450 0.49 +0.8
814,858 - CSW01_18450 0.53 +0.9
814,864 - CSW01_18450 0.53 -0.1
814,877 + CSW01_18450 0.54 +0.6
814,921 + CSW01_18450 0.58 -1.0
814,926 + CSW01_18450 0.58 -0.1
814,941 - CSW01_18450 0.59 +0.1
815,098 + CSW01_18450 0.71 -0.1
815,285 - CSW01_18450 0.86 +0.6
815,413 + -0.6
815,501 + -0.3
815,501 + -0.9
815,509 - -0.2
815,626 + -0.2
815,745 + CSW01_18455 0.11 -1.5
815,745 + CSW01_18455 0.11 +0.5
815,753 - CSW01_18455 0.11 -0.1
815,753 - CSW01_18455 0.11 +0.0
815,753 - CSW01_18455 0.11 +0.5
815,769 + CSW01_18455 0.12 +0.0
815,777 - CSW01_18455 0.13 -0.8
815,777 - CSW01_18455 0.13 +0.2
815,777 - CSW01_18455 0.13 +0.6
815,793 + CSW01_18455 0.14 +0.0
815,806 + CSW01_18455 0.14 +0.4
815,814 - CSW01_18455 0.15 -1.5
815,926 - CSW01_18455 0.21 +0.2
815,942 + CSW01_18455 0.22 +0.1
816,018 + CSW01_18455 0.26 +0.0
816,086 + CSW01_18455 0.30 +0.5
816,102 + CSW01_18455 0.30 -0.3
816,110 - CSW01_18455 0.31 +0.4
816,110 - CSW01_18455 0.31 -0.7
816,113 + CSW01_18455 0.31 +1.3
816,121 - CSW01_18455 0.31 -0.0
816,121 - CSW01_18455 0.31 +0.2
816,175 - CSW01_18455 0.34 -0.5
816,187 - CSW01_18455 0.35 -0.0
816,240 + CSW01_18455 0.38 +1.3
816,289 + CSW01_18455 0.41 +1.1
816,332 - CSW01_18455 0.43 -0.1
816,550 - CSW01_18455 0.55 +0.0
816,571 - CSW01_18455 0.56 +1.3
816,583 + CSW01_18455 0.57 +0.3
816,583 + CSW01_18455 0.57 +0.9
816,583 + CSW01_18455 0.57 +0.3
816,583 + CSW01_18455 0.57 +0.3
816,583 + CSW01_18455 0.57 -1.9
816,583 + CSW01_18455 0.57 +0.7
816,583 + CSW01_18455 0.57 +1.1
816,583 + CSW01_18455 0.57 +1.4
816,583 + CSW01_18455 0.57 -1.3
816,583 + CSW01_18455 0.57 +0.9
816,588 + CSW01_18455 0.57 -1.0
816,591 - CSW01_18455 0.57 +0.0
816,591 - CSW01_18455 0.57 +0.0
816,591 - CSW01_18455 0.57 -0.5
816,591 - CSW01_18455 0.57 -0.3
816,668 + CSW01_18455 0.61 +0.2
816,676 - CSW01_18455 0.62 -1.0
816,689 + CSW01_18455 0.63 +0.5
816,811 + CSW01_18455 0.69 +1.2
816,819 + CSW01_18455 0.70 -0.2
816,828 + CSW01_18455 0.70 +0.8
816,907 - CSW01_18455 0.74 -0.1
816,926 - CSW01_18455 0.75 +0.4
816,942 - CSW01_18455 0.76 +0.4
817,007 - CSW01_18455 0.80 -0.1
817,030 - CSW01_18455 0.81 +0.0
817,044 - CSW01_18455 0.82 +0.0
817,078 + CSW01_18455 0.84 -0.2
817,086 - CSW01_18455 0.84 -0.3
817,230 + -0.5
817,230 + +0.1
817,235 + -0.1
817,235 + +0.2
817,243 - +0.6
817,338 + +0.4
817,341 - -0.6
817,341 - +0.9
817,346 - +0.5
817,414 - CSW01_18460 0.23 +0.0
817,414 - CSW01_18460 0.23 -1.1
817,464 + CSW01_18460 0.43 +0.5
817,677 + -0.4
817,871 + CSW01_18465 0.12 +0.8
817,871 + CSW01_18465 0.12 +0.3
817,916 - CSW01_18465 0.19 +0.1
817,997 - CSW01_18465 0.31 -0.6
818,059 - CSW01_18465 0.40 +0.8
818,064 - CSW01_18465 0.41 +0.8
818,073 - CSW01_18465 0.43 +0.9
818,157 + CSW01_18465 0.55 -0.5
818,162 + CSW01_18465 0.56 -0.0
818,170 - CSW01_18465 0.57 +1.7
818,175 - CSW01_18465 0.58 +0.5
818,175 - CSW01_18465 0.58 -0.1
818,193 - CSW01_18465 0.61 -1.5
818,223 + CSW01_18465 0.65 +0.1
818,231 - CSW01_18465 0.67 -0.5
818,231 - CSW01_18465 0.67 -0.4
818,248 + CSW01_18465 0.69 -0.9
818,255 - CSW01_18465 0.70 -0.7
818,257 - CSW01_18465 0.71 +0.0
818,259 + CSW01_18465 0.71 -0.1
818,260 + CSW01_18465 0.71 +0.1
818,267 - CSW01_18465 0.72 +0.4
818,306 - CSW01_18465 0.78 -0.5
818,308 + CSW01_18465 0.78 -0.3
818,308 - CSW01_18465 0.78 -0.8
818,343 - CSW01_18465 0.84 +0.4
818,355 - CSW01_18465 0.86 -0.0
818,364 + CSW01_18465 0.87 +1.5
818,364 + CSW01_18465 0.87 -2.3
818,372 - CSW01_18465 0.88 -0.4

Or see this region's nucleotide sequence