Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18440

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18430 and CSW01_18435 overlap by 11 nucleotidesCSW01_18435 and CSW01_18440 are separated by 359 nucleotidesCSW01_18440 and CSW01_18445 are separated by 15 nucleotides CSW01_18430: CSW01_18430 - alpha-amylase, at 807,455 to 809,527 _18430 CSW01_18435: CSW01_18435 - hypothetical protein, at 809,517 to 809,702 _18435 CSW01_18440: CSW01_18440 - long-chain fatty acid transporter, at 810,062 to 811,300 _18440 CSW01_18445: CSW01_18445 - lysophospholipase VolA, at 811,316 to 813,706 _18445 Position (kb) 810 811 812Strain fitness (log2 ratio) -2 -1 0 1 2 3at 809.093 kb on - strand, within CSW01_18430at 809.146 kb on + strand, within CSW01_18430at 809.167 kb on - strand, within CSW01_18430at 809.178 kb on + strand, within CSW01_18430at 809.208 kb on - strand, within CSW01_18430at 809.232 kb on + strand, within CSW01_18430at 809.242 kb on + strand, within CSW01_18430at 809.250 kb on - strand, within CSW01_18430at 809.267 kb on + strand, within CSW01_18430at 809.295 kb on + strand, within CSW01_18430at 809.339 kb on + strandat 809.347 kb on - strandat 809.347 kb on - strandat 809.367 kb on + strandat 809.383 kb on - strandat 809.394 kb on + strandat 809.430 kb on + strandat 809.433 kb on + strandat 809.441 kb on - strandat 809.548 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.815 kb on + strandat 809.844 kb on - strandat 809.909 kb on - strandat 809.947 kb on + strandat 809.969 kb on - strandat 809.969 kb on - strandat 810.067 kb on + strandat 810.093 kb on + strandat 810.093 kb on + strandat 810.115 kb on + strandat 810.123 kb on - strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.166 kb on - strandat 810.166 kb on - strandat 810.166 kb on - strandat 810.259 kb on - strand, within CSW01_18440at 810.336 kb on - strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.448 kb on + strand, within CSW01_18440at 810.448 kb on + strand, within CSW01_18440at 810.460 kb on + strand, within CSW01_18440at 810.484 kb on - strand, within CSW01_18440at 810.495 kb on + strand, within CSW01_18440at 810.495 kb on + strand, within CSW01_18440at 810.505 kb on + strand, within CSW01_18440at 810.530 kb on + strand, within CSW01_18440at 810.533 kb on - strand, within CSW01_18440at 810.538 kb on - strand, within CSW01_18440at 810.586 kb on + strand, within CSW01_18440at 810.586 kb on + strand, within CSW01_18440at 810.601 kb on - strand, within CSW01_18440at 810.660 kb on + strand, within CSW01_18440at 810.720 kb on + strand, within CSW01_18440at 810.720 kb on + strand, within CSW01_18440at 810.777 kb on - strand, within CSW01_18440at 810.788 kb on + strand, within CSW01_18440at 810.825 kb on - strand, within CSW01_18440at 810.840 kb on + strand, within CSW01_18440at 810.884 kb on + strand, within CSW01_18440at 810.884 kb on + strand, within CSW01_18440at 810.884 kb on + strand, within CSW01_18440at 810.886 kb on + strand, within CSW01_18440at 810.894 kb on + strand, within CSW01_18440at 810.918 kb on + strand, within CSW01_18440at 810.918 kb on + strand, within CSW01_18440at 810.918 kb on + strand, within CSW01_18440at 810.926 kb on - strand, within CSW01_18440at 811.020 kb on + strand, within CSW01_18440at 811.020 kb on + strand, within CSW01_18440at 811.027 kb on + strand, within CSW01_18440at 811.028 kb on - strand, within CSW01_18440at 811.028 kb on - strand, within CSW01_18440at 811.030 kb on + strand, within CSW01_18440at 811.063 kb on - strand, within CSW01_18440at 811.096 kb on - strand, within CSW01_18440at 811.099 kb on - strand, within CSW01_18440at 811.138 kb on - strand, within CSW01_18440at 811.151 kb on - strand, within CSW01_18440at 811.184 kb on + strandat 811.192 kb on - strandat 811.199 kb on - strandat 811.240 kb on + strandat 811.267 kb on - strandat 811.267 kb on - strandat 811.267 kb on - strandat 811.342 kb on + strandat 811.347 kb on + strandat 811.350 kb on - strandat 811.359 kb on + strandat 811.401 kb on + strandat 811.409 kb on - strandat 811.436 kb on + strandat 811.525 kb on + strandat 811.595 kb on + strand, within CSW01_18445at 811.614 kb on - strand, within CSW01_18445at 811.682 kb on - strand, within CSW01_18445at 811.762 kb on + strand, within CSW01_18445at 811.765 kb on - strand, within CSW01_18445at 811.765 kb on - strand, within CSW01_18445at 811.770 kb on - strand, within CSW01_18445at 811.783 kb on + strand, within CSW01_18445at 811.805 kb on + strand, within CSW01_18445at 811.850 kb on - strand, within CSW01_18445at 812.054 kb on - strand, within CSW01_18445at 812.060 kb on + strand, within CSW01_18445at 812.135 kb on - strand, within CSW01_18445at 812.135 kb on - strand, within CSW01_18445at 812.149 kb on + strand, within CSW01_18445at 812.157 kb on - strand, within CSW01_18445at 812.158 kb on - strand, within CSW01_18445at 812.291 kb on + strand, within CSW01_18445

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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809,093 - CSW01_18430 0.79 +0.2
809,146 + CSW01_18430 0.82 +0.7
809,167 - CSW01_18430 0.83 +0.3
809,178 + CSW01_18430 0.83 +0.0
809,208 - CSW01_18430 0.85 +0.3
809,232 + CSW01_18430 0.86 +0.3
809,242 + CSW01_18430 0.86 +0.1
809,250 - CSW01_18430 0.87 +0.3
809,267 + CSW01_18430 0.87 +0.4
809,295 + CSW01_18430 0.89 -1.1
809,339 + -0.3
809,347 - +1.0
809,347 - +0.1
809,367 + +0.1
809,383 - -0.3
809,394 + +0.4
809,430 + -0.4
809,433 + +0.0
809,441 - -0.4
809,548 - CSW01_18435 0.17 +0.6
809,601 - CSW01_18435 0.45 +0.9
809,601 - CSW01_18435 0.45 -0.5
809,601 - CSW01_18435 0.45 -0.6
809,601 - CSW01_18435 0.45 -0.1
809,815 + +1.4
809,844 - -2.0
809,909 - -0.1
809,947 + +0.4
809,969 - +2.0
809,969 - +0.9
810,067 + +0.6
810,093 + +0.9
810,093 + +1.7
810,115 + -0.2
810,123 - +0.1
810,158 + -0.1
810,158 + -0.6
810,158 + +1.0
810,158 + -0.1
810,166 - +0.5
810,166 - -0.1
810,166 - +1.0
810,259 - CSW01_18440 0.16 +1.0
810,336 - CSW01_18440 0.22 -0.4
810,409 + CSW01_18440 0.28 +1.2
810,409 + CSW01_18440 0.28 -0.7
810,409 + CSW01_18440 0.28 +1.0
810,448 + CSW01_18440 0.31 +2.4
810,448 + CSW01_18440 0.31 +1.1
810,460 + CSW01_18440 0.32 +0.9
810,484 - CSW01_18440 0.34 +2.8
810,495 + CSW01_18440 0.35 +0.6
810,495 + CSW01_18440 0.35 +0.6
810,505 + CSW01_18440 0.36 -0.1
810,530 + CSW01_18440 0.38 +0.1
810,533 - CSW01_18440 0.38 +0.1
810,538 - CSW01_18440 0.38 +0.7
810,586 + CSW01_18440 0.42 +0.1
810,586 + CSW01_18440 0.42 +0.1
810,601 - CSW01_18440 0.44 -0.8
810,660 + CSW01_18440 0.48 -0.3
810,720 + CSW01_18440 0.53 -0.6
810,720 + CSW01_18440 0.53 +1.4
810,777 - CSW01_18440 0.58 +0.6
810,788 + CSW01_18440 0.59 +0.3
810,825 - CSW01_18440 0.62 +0.2
810,840 + CSW01_18440 0.63 -0.1
810,884 + CSW01_18440 0.66 +0.5
810,884 + CSW01_18440 0.66 +0.4
810,884 + CSW01_18440 0.66 +1.0
810,886 + CSW01_18440 0.67 +0.8
810,894 + CSW01_18440 0.67 +0.3
810,918 + CSW01_18440 0.69 -0.1
810,918 + CSW01_18440 0.69 +0.0
810,918 + CSW01_18440 0.69 -0.4
810,926 - CSW01_18440 0.70 +1.9
811,020 + CSW01_18440 0.77 +0.9
811,020 + CSW01_18440 0.77 +0.2
811,027 + CSW01_18440 0.78 -0.5
811,028 - CSW01_18440 0.78 -1.2
811,028 - CSW01_18440 0.78 -0.2
811,030 + CSW01_18440 0.78 +1.6
811,063 - CSW01_18440 0.81 -0.4
811,096 - CSW01_18440 0.83 +0.5
811,099 - CSW01_18440 0.84 -0.4
811,138 - CSW01_18440 0.87 +0.1
811,151 - CSW01_18440 0.88 -0.1
811,184 + +0.3
811,192 - +0.3
811,199 - +0.1
811,240 + +1.8
811,267 - +1.4
811,267 - -0.1
811,267 - +2.0
811,342 + +0.5
811,347 + -0.0
811,350 - -0.7
811,359 + -0.3
811,401 + +0.5
811,409 - +0.0
811,436 + -0.7
811,525 + +0.4
811,595 + CSW01_18445 0.12 +0.8
811,614 - CSW01_18445 0.12 +2.3
811,682 - CSW01_18445 0.15 +1.0
811,762 + CSW01_18445 0.19 +1.2
811,765 - CSW01_18445 0.19 +2.5
811,765 - CSW01_18445 0.19 -0.7
811,770 - CSW01_18445 0.19 -0.3
811,783 + CSW01_18445 0.20 +0.2
811,805 + CSW01_18445 0.20 -2.0
811,850 - CSW01_18445 0.22 -0.4
812,054 - CSW01_18445 0.31 +0.4
812,060 + CSW01_18445 0.31 +0.4
812,135 - CSW01_18445 0.34 +1.0
812,135 - CSW01_18445 0.34 +0.0
812,149 + CSW01_18445 0.35 +0.5
812,157 - CSW01_18445 0.35 +0.3
812,158 - CSW01_18445 0.35 +0.4
812,291 + CSW01_18445 0.41 +0.4

Or see this region's nucleotide sequence