Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18395

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18390 and CSW01_18395 are separated by 0 nucleotidesCSW01_18395 and CSW01_18400 are separated by 4 nucleotidesCSW01_18400 and CSW01_18405 overlap by 8 nucleotides CSW01_18390: CSW01_18390 - sensor histidine kinase, at 800,252 to 801,331 _18390 CSW01_18395: CSW01_18395 - hypothetical protein, at 801,332 to 802,576 _18395 CSW01_18400: CSW01_18400 - outer membrane lipoprotein-sorting protein, at 802,581 to 803,324 _18400 CSW01_18405: CSW01_18405 - ABC transporter permease, at 803,317 to 804,576 _18405 Position (kb) 801 802 803Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 800.372 kb on + strand, within CSW01_18390at 800.385 kb on + strand, within CSW01_18390at 800.385 kb on + strand, within CSW01_18390at 800.428 kb on - strand, within CSW01_18390at 800.493 kb on - strand, within CSW01_18390at 800.495 kb on + strand, within CSW01_18390at 800.539 kb on - strand, within CSW01_18390at 800.553 kb on - strand, within CSW01_18390at 800.553 kb on - strand, within CSW01_18390at 800.563 kb on - strand, within CSW01_18390at 800.598 kb on - strand, within CSW01_18390at 800.637 kb on + strand, within CSW01_18390at 800.645 kb on - strand, within CSW01_18390at 800.645 kb on - strand, within CSW01_18390at 800.680 kb on + strand, within CSW01_18390at 800.729 kb on - strand, within CSW01_18390at 800.748 kb on - strand, within CSW01_18390at 800.748 kb on - strand, within CSW01_18390at 800.748 kb on - strand, within CSW01_18390at 800.803 kb on - strand, within CSW01_18390at 800.883 kb on + strand, within CSW01_18390at 801.068 kb on + strand, within CSW01_18390at 801.072 kb on - strand, within CSW01_18390at 801.072 kb on - strand, within CSW01_18390at 801.104 kb on + strand, within CSW01_18390at 801.104 kb on + strand, within CSW01_18390at 801.149 kb on + strand, within CSW01_18390at 801.272 kb on - strandat 801.272 kb on - strandat 801.441 kb on - strandat 801.441 kb on - strandat 801.443 kb on + strandat 801.451 kb on - strandat 801.463 kb on - strand, within CSW01_18395at 801.463 kb on - strand, within CSW01_18395at 801.502 kb on + strand, within CSW01_18395at 801.512 kb on + strand, within CSW01_18395at 801.545 kb on - strand, within CSW01_18395at 801.579 kb on + strand, within CSW01_18395at 801.582 kb on - strand, within CSW01_18395at 801.605 kb on + strand, within CSW01_18395at 801.626 kb on + strand, within CSW01_18395at 801.634 kb on - strand, within CSW01_18395at 801.659 kb on + strand, within CSW01_18395at 801.722 kb on + strand, within CSW01_18395at 801.737 kb on + strand, within CSW01_18395at 801.751 kb on + strand, within CSW01_18395at 801.769 kb on - strand, within CSW01_18395at 801.776 kb on + strand, within CSW01_18395at 801.874 kb on + strand, within CSW01_18395at 801.874 kb on + strand, within CSW01_18395at 801.884 kb on + strand, within CSW01_18395at 801.884 kb on + strand, within CSW01_18395at 801.910 kb on - strand, within CSW01_18395at 801.929 kb on + strand, within CSW01_18395at 801.944 kb on - strand, within CSW01_18395at 802.006 kb on + strand, within CSW01_18395at 802.009 kb on - strand, within CSW01_18395at 802.060 kb on + strand, within CSW01_18395at 802.095 kb on + strand, within CSW01_18395at 802.126 kb on + strand, within CSW01_18395at 802.158 kb on + strand, within CSW01_18395at 802.199 kb on + strand, within CSW01_18395at 802.206 kb on - strand, within CSW01_18395at 802.244 kb on + strand, within CSW01_18395at 802.278 kb on + strand, within CSW01_18395at 802.337 kb on - strand, within CSW01_18395at 802.344 kb on + strand, within CSW01_18395at 802.362 kb on - strand, within CSW01_18395at 802.368 kb on + strand, within CSW01_18395at 802.528 kb on + strandat 802.535 kb on + strandat 802.541 kb on - strandat 802.571 kb on + strandat 802.579 kb on - strandat 802.639 kb on + strandat 802.639 kb on + strandat 802.639 kb on + strandat 802.647 kb on - strandat 802.647 kb on - strandat 802.747 kb on + strand, within CSW01_18400at 802.747 kb on + strand, within CSW01_18400at 802.778 kb on + strand, within CSW01_18400at 802.807 kb on + strand, within CSW01_18400at 802.814 kb on + strand, within CSW01_18400at 802.822 kb on - strand, within CSW01_18400at 802.829 kb on + strand, within CSW01_18400at 802.887 kb on + strand, within CSW01_18400at 802.928 kb on - strand, within CSW01_18400at 802.945 kb on + strand, within CSW01_18400at 802.945 kb on + strand, within CSW01_18400at 802.953 kb on - strand, within CSW01_18400at 802.953 kb on - strand, within CSW01_18400at 803.011 kb on - strand, within CSW01_18400at 803.012 kb on + strand, within CSW01_18400at 803.092 kb on + strand, within CSW01_18400at 803.191 kb on - strand, within CSW01_18400at 803.245 kb on - strand, within CSW01_18400at 803.245 kb on - strand, within CSW01_18400at 803.250 kb on - strandat 803.252 kb on + strandat 803.252 kb on + strandat 803.264 kb on - strandat 803.293 kb on - strandat 803.293 kb on - strandat 803.366 kb on + strandat 803.377 kb on - strandat 803.379 kb on - strandat 803.392 kb on + strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.400 kb on - strandat 803.402 kb on + strandat 803.405 kb on - strandat 803.417 kb on + strandat 803.493 kb on - strand, within CSW01_18405at 803.539 kb on + strand, within CSW01_18405at 803.545 kb on - strand, within CSW01_18405at 803.545 kb on - strand, within CSW01_18405at 803.547 kb on - strand, within CSW01_18405at 803.549 kb on + strand, within CSW01_18405

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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800,372 + CSW01_18390 0.11 +0.6
800,385 + CSW01_18390 0.12 +0.0
800,385 + CSW01_18390 0.12 +1.3
800,428 - CSW01_18390 0.16 -0.0
800,493 - CSW01_18390 0.22 +0.1
800,495 + CSW01_18390 0.23 +0.2
800,539 - CSW01_18390 0.27 -0.2
800,553 - CSW01_18390 0.28 +0.0
800,553 - CSW01_18390 0.28 +0.4
800,563 - CSW01_18390 0.29 -0.8
800,598 - CSW01_18390 0.32 +0.3
800,637 + CSW01_18390 0.36 +0.1
800,645 - CSW01_18390 0.36 +0.7
800,645 - CSW01_18390 0.36 +0.3
800,680 + CSW01_18390 0.40 +0.5
800,729 - CSW01_18390 0.44 +0.2
800,748 - CSW01_18390 0.46 -1.1
800,748 - CSW01_18390 0.46 -0.1
800,748 - CSW01_18390 0.46 +0.1
800,803 - CSW01_18390 0.51 +0.6
800,883 + CSW01_18390 0.58 -0.9
801,068 + CSW01_18390 0.76 +0.1
801,072 - CSW01_18390 0.76 +0.0
801,072 - CSW01_18390 0.76 -0.3
801,104 + CSW01_18390 0.79 -0.6
801,104 + CSW01_18390 0.79 +0.1
801,149 + CSW01_18390 0.83 -0.2
801,272 - -0.1
801,272 - +0.1
801,441 - -0.6
801,441 - -0.6
801,443 + +0.2
801,451 - +0.9
801,463 - CSW01_18395 0.11 +0.4
801,463 - CSW01_18395 0.11 +1.1
801,502 + CSW01_18395 0.14 -0.3
801,512 + CSW01_18395 0.14 +0.8
801,545 - CSW01_18395 0.17 -0.2
801,579 + CSW01_18395 0.20 +0.2
801,582 - CSW01_18395 0.20 -0.2
801,605 + CSW01_18395 0.22 +1.1
801,626 + CSW01_18395 0.24 +0.6
801,634 - CSW01_18395 0.24 -0.4
801,659 + CSW01_18395 0.26 -0.8
801,722 + CSW01_18395 0.31 +0.1
801,737 + CSW01_18395 0.33 -0.2
801,751 + CSW01_18395 0.34 +0.3
801,769 - CSW01_18395 0.35 -1.6
801,776 + CSW01_18395 0.36 +0.3
801,874 + CSW01_18395 0.44 +0.0
801,874 + CSW01_18395 0.44 +0.5
801,884 + CSW01_18395 0.44 +0.4
801,884 + CSW01_18395 0.44 +0.2
801,910 - CSW01_18395 0.46 -0.4
801,929 + CSW01_18395 0.48 +0.2
801,944 - CSW01_18395 0.49 -2.7
802,006 + CSW01_18395 0.54 +0.4
802,009 - CSW01_18395 0.54 -1.2
802,060 + CSW01_18395 0.58 +0.2
802,095 + CSW01_18395 0.61 -1.2
802,126 + CSW01_18395 0.64 -0.1
802,158 + CSW01_18395 0.66 -0.8
802,199 + CSW01_18395 0.70 -1.0
802,206 - CSW01_18395 0.70 +0.6
802,244 + CSW01_18395 0.73 -1.6
802,278 + CSW01_18395 0.76 -0.7
802,337 - CSW01_18395 0.81 -0.6
802,344 + CSW01_18395 0.81 +1.8
802,362 - CSW01_18395 0.83 -0.2
802,368 + CSW01_18395 0.83 +0.3
802,528 + -0.2
802,535 + -0.2
802,541 - +0.4
802,571 + +0.2
802,579 - +1.9
802,639 + +0.1
802,639 + -0.6
802,639 + +0.4
802,647 - +0.6
802,647 - +0.3
802,747 + CSW01_18400 0.22 -0.2
802,747 + CSW01_18400 0.22 -3.4
802,778 + CSW01_18400 0.26 +0.7
802,807 + CSW01_18400 0.30 -1.5
802,814 + CSW01_18400 0.31 -0.1
802,822 - CSW01_18400 0.32 -0.3
802,829 + CSW01_18400 0.33 +0.1
802,887 + CSW01_18400 0.41 +0.3
802,928 - CSW01_18400 0.47 +0.5
802,945 + CSW01_18400 0.49 -0.4
802,945 + CSW01_18400 0.49 +0.8
802,953 - CSW01_18400 0.50 +0.4
802,953 - CSW01_18400 0.50 -0.2
803,011 - CSW01_18400 0.58 +1.7
803,012 + CSW01_18400 0.58 -0.2
803,092 + CSW01_18400 0.69 +0.7
803,191 - CSW01_18400 0.82 +0.4
803,245 - CSW01_18400 0.89 +0.5
803,245 - CSW01_18400 0.89 -0.0
803,250 - -0.6
803,252 + -0.1
803,252 + +0.1
803,264 - -0.8
803,293 - +0.2
803,293 - -0.8
803,366 + +0.0
803,377 - +1.0
803,379 - +0.1
803,392 + -0.6
803,400 - -1.0
803,400 - +1.6
803,400 - -0.3
803,400 - +0.6
803,402 + +0.6
803,405 - +0.1
803,417 + +1.2
803,493 - CSW01_18405 0.14 -0.7
803,539 + CSW01_18405 0.18 +0.2
803,545 - CSW01_18405 0.18 -0.4
803,545 - CSW01_18405 0.18 +0.6
803,547 - CSW01_18405 0.18 +0.5
803,549 + CSW01_18405 0.18 +0.3

Or see this region's nucleotide sequence