Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18335

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18330 and CSW01_18335 are separated by 37 nucleotidesCSW01_18335 and CSW01_18340 are separated by 137 nucleotides CSW01_18330: CSW01_18330 - drug/metabolite DMT transporter permease, at 778,268 to 779,254 _18330 CSW01_18335: CSW01_18335 - sugar O-acetyltransferase, at 779,292 to 779,870 _18335 CSW01_18340: CSW01_18340 - HlyC/CorC family transporter, at 780,008 to 781,321 _18340 Position (kb) 779 780Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 778.296 kb on + strandat 778.390 kb on + strand, within CSW01_18330at 778.502 kb on + strand, within CSW01_18330at 778.567 kb on + strand, within CSW01_18330at 778.577 kb on - strand, within CSW01_18330at 778.873 kb on - strand, within CSW01_18330at 778.888 kb on - strand, within CSW01_18330at 778.894 kb on - strand, within CSW01_18330at 778.965 kb on - strand, within CSW01_18330at 778.965 kb on - strand, within CSW01_18330at 778.983 kb on + strand, within CSW01_18330at 779.001 kb on - strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.176 kb on + strandat 779.188 kb on + strandat 779.236 kb on + strandat 779.237 kb on - strandat 779.244 kb on - strandat 779.271 kb on - strandat 779.318 kb on + strandat 779.326 kb on - strandat 779.350 kb on + strand, within CSW01_18335at 779.522 kb on + strand, within CSW01_18335at 779.522 kb on + strand, within CSW01_18335at 779.540 kb on - strand, within CSW01_18335at 779.623 kb on - strand, within CSW01_18335at 779.726 kb on + strand, within CSW01_18335at 779.729 kb on + strand, within CSW01_18335at 779.737 kb on - strand, within CSW01_18335at 779.737 kb on - strand, within CSW01_18335at 779.739 kb on - strand, within CSW01_18335at 779.808 kb on - strand, within CSW01_18335at 779.892 kb on + strandat 779.964 kb on - strandat 780.045 kb on - strandat 780.108 kb on + strandat 780.146 kb on - strand, within CSW01_18340at 780.148 kb on + strand, within CSW01_18340at 780.156 kb on - strand, within CSW01_18340at 780.238 kb on + strand, within CSW01_18340at 780.246 kb on - strand, within CSW01_18340at 780.304 kb on + strand, within CSW01_18340at 780.322 kb on - strand, within CSW01_18340at 780.415 kb on + strand, within CSW01_18340at 780.415 kb on + strand, within CSW01_18340at 780.434 kb on + strand, within CSW01_18340at 780.441 kb on - strand, within CSW01_18340at 780.533 kb on - strand, within CSW01_18340at 780.543 kb on + strand, within CSW01_18340at 780.544 kb on - strand, within CSW01_18340at 780.545 kb on - strand, within CSW01_18340at 780.551 kb on - strand, within CSW01_18340at 780.562 kb on + strand, within CSW01_18340at 780.570 kb on - strand, within CSW01_18340at 780.645 kb on - strand, within CSW01_18340at 780.697 kb on - strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.729 kb on + strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.737 kb on - strand, within CSW01_18340at 780.776 kb on + strand, within CSW01_18340at 780.781 kb on + strand, within CSW01_18340at 780.781 kb on + strand, within CSW01_18340at 780.794 kb on - strand, within CSW01_18340

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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778,296 + +0.4
778,390 + CSW01_18330 0.12 -0.7
778,502 + CSW01_18330 0.24 -0.9
778,567 + CSW01_18330 0.30 -0.2
778,577 - CSW01_18330 0.31 +0.6
778,873 - CSW01_18330 0.61 -1.5
778,888 - CSW01_18330 0.63 +0.8
778,894 - CSW01_18330 0.63 -0.9
778,965 - CSW01_18330 0.71 -0.3
778,965 - CSW01_18330 0.71 +0.0
778,983 + CSW01_18330 0.72 +1.5
779,001 - CSW01_18330 0.74 +0.9
779,008 + CSW01_18330 0.75 +0.6
779,008 + CSW01_18330 0.75 -0.7
779,079 + CSW01_18330 0.82 -0.4
779,079 + CSW01_18330 0.82 -0.3
779,085 - CSW01_18330 0.83 -0.3
779,085 - CSW01_18330 0.83 -0.7
779,176 + +0.0
779,188 + +2.2
779,236 + +2.4
779,237 - +0.5
779,244 - +0.1
779,271 - -0.0
779,318 + -0.4
779,326 - +0.7
779,350 + CSW01_18335 0.10 -0.2
779,522 + CSW01_18335 0.40 -0.3
779,522 + CSW01_18335 0.40 -0.2
779,540 - CSW01_18335 0.43 +2.6
779,623 - CSW01_18335 0.57 +0.1
779,726 + CSW01_18335 0.75 +0.3
779,729 + CSW01_18335 0.75 -0.7
779,737 - CSW01_18335 0.77 +0.8
779,737 - CSW01_18335 0.77 -1.0
779,739 - CSW01_18335 0.77 -2.8
779,808 - CSW01_18335 0.89 +1.9
779,892 + -0.6
779,964 - -0.2
780,045 - +0.9
780,108 + +0.3
780,146 - CSW01_18340 0.11 -1.0
780,148 + CSW01_18340 0.11 +0.3
780,156 - CSW01_18340 0.11 -2.2
780,238 + CSW01_18340 0.18 -0.5
780,246 - CSW01_18340 0.18 +0.2
780,304 + CSW01_18340 0.23 +1.2
780,322 - CSW01_18340 0.24 +0.7
780,415 + CSW01_18340 0.31 -0.8
780,415 + CSW01_18340 0.31 +0.6
780,434 + CSW01_18340 0.32 +1.1
780,441 - CSW01_18340 0.33 -0.4
780,533 - CSW01_18340 0.40 +0.3
780,543 + CSW01_18340 0.41 -0.2
780,544 - CSW01_18340 0.41 -0.4
780,545 - CSW01_18340 0.41 -1.0
780,551 - CSW01_18340 0.41 -0.6
780,562 + CSW01_18340 0.42 -1.2
780,570 - CSW01_18340 0.43 +0.1
780,645 - CSW01_18340 0.48 +0.0
780,697 - CSW01_18340 0.52 -0.1
780,729 + CSW01_18340 0.55 +1.3
780,729 + CSW01_18340 0.55 -0.4
780,729 + CSW01_18340 0.55 +0.6
780,729 + CSW01_18340 0.55 -0.2
780,729 + CSW01_18340 0.55 +0.5
780,737 - CSW01_18340 0.55 +0.1
780,737 - CSW01_18340 0.55 +0.0
780,737 - CSW01_18340 0.55 +1.9
780,776 + CSW01_18340 0.58 -1.0
780,781 + CSW01_18340 0.59 +0.0
780,781 + CSW01_18340 0.59 +0.3
780,794 - CSW01_18340 0.60 +0.5

Or see this region's nucleotide sequence