Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18220

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18215 and CSW01_18220 are separated by 327 nucleotidesCSW01_18220 and CSW01_18225 are separated by 34 nucleotides CSW01_18215: CSW01_18215 - N-acetylglucosamine-binding protein GbpA, at 753,664 to 755,121 _18215 CSW01_18220: CSW01_18220 - peptidase, at 755,449 to 756,879 _18220 CSW01_18225: CSW01_18225 - aminopeptidase, at 756,914 to 758,419 _18225 Position (kb) 755 756 757Strain fitness (log2 ratio) -2 -1 0 1at 754.490 kb on + strand, within CSW01_18215at 754.500 kb on + strand, within CSW01_18215at 754.500 kb on + strand, within CSW01_18215at 754.500 kb on + strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.508 kb on - strand, within CSW01_18215at 754.564 kb on + strand, within CSW01_18215at 754.566 kb on + strand, within CSW01_18215at 754.602 kb on + strand, within CSW01_18215at 754.610 kb on - strand, within CSW01_18215at 754.653 kb on - strand, within CSW01_18215at 754.653 kb on - strand, within CSW01_18215at 754.714 kb on + strand, within CSW01_18215at 754.723 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.796 kb on + strand, within CSW01_18215at 754.804 kb on - strand, within CSW01_18215at 754.804 kb on - strand, within CSW01_18215at 754.833 kb on - strand, within CSW01_18215at 754.884 kb on - strand, within CSW01_18215at 754.955 kb on + strand, within CSW01_18215at 755.007 kb on + strandat 755.025 kb on + strandat 755.025 kb on + strandat 755.025 kb on + strandat 755.073 kb on - strandat 755.190 kb on + strandat 755.210 kb on + strandat 755.240 kb on - strandat 755.244 kb on + strandat 755.280 kb on + strandat 755.481 kb on + strandat 755.489 kb on - strandat 755.523 kb on - strandat 755.527 kb on + strandat 755.527 kb on + strandat 755.527 kb on + strandat 755.552 kb on + strandat 755.560 kb on - strandat 755.580 kb on - strandat 755.602 kb on - strand, within CSW01_18220at 755.687 kb on + strand, within CSW01_18220at 755.729 kb on - strand, within CSW01_18220at 755.755 kb on + strand, within CSW01_18220at 755.793 kb on - strand, within CSW01_18220at 755.834 kb on + strand, within CSW01_18220at 755.967 kb on + strand, within CSW01_18220at 755.978 kb on - strand, within CSW01_18220at 755.998 kb on - strand, within CSW01_18220at 756.132 kb on + strand, within CSW01_18220at 756.142 kb on + strand, within CSW01_18220at 756.153 kb on + strand, within CSW01_18220at 756.155 kb on + strand, within CSW01_18220at 756.211 kb on + strand, within CSW01_18220at 756.211 kb on + strand, within CSW01_18220at 756.219 kb on - strand, within CSW01_18220at 756.219 kb on - strand, within CSW01_18220at 756.219 kb on - strand, within CSW01_18220at 756.219 kb on - strand, within CSW01_18220at 756.232 kb on + strand, within CSW01_18220at 756.410 kb on + strand, within CSW01_18220at 756.410 kb on + strand, within CSW01_18220at 756.410 kb on + strand, within CSW01_18220at 756.612 kb on + strand, within CSW01_18220at 756.620 kb on - strand, within CSW01_18220at 756.733 kb on + strand, within CSW01_18220at 756.734 kb on + strand, within CSW01_18220at 756.742 kb on - strandat 756.748 kb on - strandat 756.790 kb on - strandat 756.823 kb on - strandat 756.943 kb on - strandat 756.943 kb on - strandat 757.017 kb on + strandat 757.036 kb on + strandat 757.062 kb on + strandat 757.077 kb on - strand, within CSW01_18225at 757.146 kb on - strand, within CSW01_18225at 757.148 kb on + strand, within CSW01_18225at 757.157 kb on + strand, within CSW01_18225at 757.165 kb on - strand, within CSW01_18225at 757.165 kb on - strand, within CSW01_18225at 757.172 kb on - strand, within CSW01_18225at 757.172 kb on - strand, within CSW01_18225at 757.257 kb on - strand, within CSW01_18225at 757.270 kb on + strand, within CSW01_18225at 757.278 kb on - strand, within CSW01_18225at 757.280 kb on + strand, within CSW01_18225at 757.283 kb on - strand, within CSW01_18225at 757.283 kb on - strand, within CSW01_18225at 757.335 kb on - strand, within CSW01_18225at 757.335 kb on - strand, within CSW01_18225at 757.408 kb on + strand, within CSW01_18225at 757.466 kb on + strand, within CSW01_18225at 757.474 kb on - strand, within CSW01_18225at 757.655 kb on - strand, within CSW01_18225at 757.786 kb on + strand, within CSW01_18225at 757.795 kb on - strand, within CSW01_18225at 757.844 kb on - strand, within CSW01_18225at 757.855 kb on + strand, within CSW01_18225

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
remove
754,490 + CSW01_18215 0.57 +1.6
754,500 + CSW01_18215 0.57 +0.2
754,500 + CSW01_18215 0.57 +0.0
754,500 + CSW01_18215 0.57 +0.3
754,508 - CSW01_18215 0.58 +0.5
754,508 - CSW01_18215 0.58 -0.2
754,508 - CSW01_18215 0.58 -0.5
754,508 - CSW01_18215 0.58 -0.9
754,508 - CSW01_18215 0.58 -0.2
754,508 - CSW01_18215 0.58 +0.0
754,508 - CSW01_18215 0.58 +0.5
754,508 - CSW01_18215 0.58 -0.3
754,508 - CSW01_18215 0.58 -1.0
754,508 - CSW01_18215 0.58 -0.2
754,508 - CSW01_18215 0.58 -0.2
754,564 + CSW01_18215 0.62 +0.1
754,566 + CSW01_18215 0.62 +0.4
754,602 + CSW01_18215 0.64 +0.9
754,610 - CSW01_18215 0.65 -1.3
754,653 - CSW01_18215 0.68 +0.2
754,653 - CSW01_18215 0.68 +0.0
754,714 + CSW01_18215 0.72 -0.8
754,723 + CSW01_18215 0.73 +0.1
754,796 + CSW01_18215 0.78 +0.9
754,796 + CSW01_18215 0.78 +0.3
754,796 + CSW01_18215 0.78 +0.9
754,796 + CSW01_18215 0.78 +0.0
754,796 + CSW01_18215 0.78 +1.5
754,804 - CSW01_18215 0.78 -1.9
754,804 - CSW01_18215 0.78 -0.6
754,833 - CSW01_18215 0.80 -0.3
754,884 - CSW01_18215 0.84 -0.0
754,955 + CSW01_18215 0.89 +1.2
755,007 + -0.4
755,025 + -0.1
755,025 + +0.6
755,025 + +1.4
755,073 - -1.2
755,190 + +0.1
755,210 + +1.0
755,240 - -0.2
755,244 + -0.2
755,280 + -0.7
755,481 + +0.5
755,489 - -0.4
755,523 - -0.3
755,527 + +0.5
755,527 + +0.8
755,527 + -0.2
755,552 + +0.1
755,560 - -0.0
755,580 - -1.9
755,602 - CSW01_18220 0.11 -0.3
755,687 + CSW01_18220 0.17 -0.3
755,729 - CSW01_18220 0.20 -1.2
755,755 + CSW01_18220 0.21 +0.2
755,793 - CSW01_18220 0.24 +0.7
755,834 + CSW01_18220 0.27 +0.1
755,967 + CSW01_18220 0.36 -0.2
755,978 - CSW01_18220 0.37 +0.0
755,998 - CSW01_18220 0.38 +1.0
756,132 + CSW01_18220 0.48 +0.2
756,142 + CSW01_18220 0.48 -0.0
756,153 + CSW01_18220 0.49 +0.9
756,155 + CSW01_18220 0.49 +1.6
756,211 + CSW01_18220 0.53 +0.3
756,211 + CSW01_18220 0.53 +0.6
756,219 - CSW01_18220 0.54 -0.5
756,219 - CSW01_18220 0.54 -0.1
756,219 - CSW01_18220 0.54 -0.4
756,219 - CSW01_18220 0.54 +0.8
756,232 + CSW01_18220 0.55 +0.2
756,410 + CSW01_18220 0.67 +0.3
756,410 + CSW01_18220 0.67 +0.0
756,410 + CSW01_18220 0.67 -0.5
756,612 + CSW01_18220 0.81 +0.2
756,620 - CSW01_18220 0.82 +1.6
756,733 + CSW01_18220 0.90 +0.5
756,734 + CSW01_18220 0.90 -0.4
756,742 - -1.2
756,748 - -1.2
756,790 - +0.5
756,823 - +0.5
756,943 - +1.6
756,943 - +1.2
757,017 + -0.4
757,036 + -0.1
757,062 + -1.6
757,077 - CSW01_18225 0.11 -1.5
757,146 - CSW01_18225 0.15 -0.6
757,148 + CSW01_18225 0.16 -0.5
757,157 + CSW01_18225 0.16 -0.4
757,165 - CSW01_18225 0.17 -0.0
757,165 - CSW01_18225 0.17 +0.1
757,172 - CSW01_18225 0.17 +0.8
757,172 - CSW01_18225 0.17 +0.7
757,257 - CSW01_18225 0.23 -0.4
757,270 + CSW01_18225 0.24 +1.2
757,278 - CSW01_18225 0.24 +0.0
757,280 + CSW01_18225 0.24 +1.0
757,283 - CSW01_18225 0.25 -0.4
757,283 - CSW01_18225 0.25 +0.8
757,335 - CSW01_18225 0.28 +0.8
757,335 - CSW01_18225 0.28 +0.0
757,408 + CSW01_18225 0.33 -0.1
757,466 + CSW01_18225 0.37 +0.4
757,474 - CSW01_18225 0.37 +0.0
757,655 - CSW01_18225 0.49 -0.4
757,786 + CSW01_18225 0.58 -0.4
757,795 - CSW01_18225 0.58 +0.0
757,844 - CSW01_18225 0.62 +0.1
757,855 + CSW01_18225 0.62 +0.6

Or see this region's nucleotide sequence