Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16885

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16880 and CSW01_16885 are separated by 97 nucleotidesCSW01_16885 and CSW01_16890 are separated by 102 nucleotides CSW01_16880: CSW01_16880 - potassium transporter Kup, at 461,872 to 463,734 _16880 CSW01_16885: CSW01_16885 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 463,832 to 467,071 _16885 CSW01_16890: CSW01_16890 - sensor histidine kinase KdpD, at 467,174 to 468,667 _16890 Position (kb) 463 464 465 466 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 462.854 kb on + strand, within CSW01_16880at 462.854 kb on + strand, within CSW01_16880at 462.961 kb on + strand, within CSW01_16880at 462.964 kb on + strand, within CSW01_16880at 462.964 kb on + strand, within CSW01_16880at 462.964 kb on + strand, within CSW01_16880at 462.971 kb on + strand, within CSW01_16880at 462.972 kb on - strand, within CSW01_16880at 462.979 kb on - strand, within CSW01_16880at 463.039 kb on - strand, within CSW01_16880at 463.131 kb on + strand, within CSW01_16880at 463.268 kb on + strand, within CSW01_16880at 463.324 kb on + strand, within CSW01_16880at 463.356 kb on + strand, within CSW01_16880at 463.381 kb on + strand, within CSW01_16880at 463.444 kb on + strand, within CSW01_16880at 463.471 kb on + strand, within CSW01_16880at 463.580 kb on + strandat 463.588 kb on - strandat 463.588 kb on - strandat 463.588 kb on - strandat 463.588 kb on - strandat 463.736 kb on - strandat 463.761 kb on - strandat 463.784 kb on + strandat 463.792 kb on - strandat 463.792 kb on - strandat 463.897 kb on + strandat 463.905 kb on - strandat 463.917 kb on + strandat 463.925 kb on - strandat 463.940 kb on - strandat 463.983 kb on + strandat 463.991 kb on - strandat 463.993 kb on + strandat 464.056 kb on - strandat 464.157 kb on + strand, within CSW01_16885at 464.163 kb on + strand, within CSW01_16885at 464.163 kb on + strand, within CSW01_16885at 464.163 kb on + strand, within CSW01_16885at 464.163 kb on + strand, within CSW01_16885at 464.165 kb on - strand, within CSW01_16885at 464.171 kb on - strand, within CSW01_16885at 464.171 kb on - strand, within CSW01_16885at 464.171 kb on - strand, within CSW01_16885at 464.263 kb on - strand, within CSW01_16885at 464.265 kb on + strand, within CSW01_16885at 464.314 kb on + strand, within CSW01_16885at 464.359 kb on + strand, within CSW01_16885at 464.400 kb on + strand, within CSW01_16885at 464.499 kb on - strand, within CSW01_16885at 464.542 kb on - strand, within CSW01_16885at 464.542 kb on - strand, within CSW01_16885at 464.659 kb on + strand, within CSW01_16885at 464.744 kb on - strand, within CSW01_16885at 464.744 kb on - strand, within CSW01_16885at 464.744 kb on - strand, within CSW01_16885at 464.764 kb on - strand, within CSW01_16885at 464.764 kb on - strand, within CSW01_16885at 464.772 kb on + strand, within CSW01_16885at 464.835 kb on + strand, within CSW01_16885at 464.892 kb on + strand, within CSW01_16885at 464.895 kb on - strand, within CSW01_16885at 465.100 kb on + strand, within CSW01_16885at 465.108 kb on - strand, within CSW01_16885at 465.143 kb on + strand, within CSW01_16885at 465.288 kb on - strand, within CSW01_16885at 465.298 kb on - strand, within CSW01_16885at 465.370 kb on + strand, within CSW01_16885at 465.543 kb on + strand, within CSW01_16885at 465.551 kb on - strand, within CSW01_16885at 465.554 kb on + strand, within CSW01_16885at 465.630 kb on - strand, within CSW01_16885at 465.654 kb on + strand, within CSW01_16885at 465.730 kb on + strand, within CSW01_16885at 465.736 kb on + strand, within CSW01_16885at 465.759 kb on + strand, within CSW01_16885at 465.812 kb on + strand, within CSW01_16885at 465.812 kb on + strand, within CSW01_16885at 465.820 kb on - strand, within CSW01_16885at 465.894 kb on - strand, within CSW01_16885at 465.906 kb on - strand, within CSW01_16885at 465.906 kb on - strand, within CSW01_16885at 466.056 kb on + strand, within CSW01_16885at 466.147 kb on - strand, within CSW01_16885at 466.175 kb on + strand, within CSW01_16885at 466.180 kb on + strand, within CSW01_16885at 466.253 kb on - strand, within CSW01_16885at 466.365 kb on - strand, within CSW01_16885at 466.365 kb on - strand, within CSW01_16885at 466.365 kb on - strand, within CSW01_16885at 466.433 kb on + strand, within CSW01_16885at 466.493 kb on + strand, within CSW01_16885at 466.514 kb on - strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.537 kb on + strand, within CSW01_16885at 466.545 kb on - strand, within CSW01_16885at 466.545 kb on - strand, within CSW01_16885at 466.554 kb on - strand, within CSW01_16885at 466.564 kb on - strand, within CSW01_16885at 466.653 kb on + strand, within CSW01_16885at 466.660 kb on + strand, within CSW01_16885at 466.660 kb on + strand, within CSW01_16885at 466.660 kb on + strand, within CSW01_16885at 466.661 kb on - strand, within CSW01_16885at 466.666 kb on - strand, within CSW01_16885at 466.735 kb on - strand, within CSW01_16885at 466.735 kb on - strand, within CSW01_16885at 466.850 kb on + strandat 466.850 kb on + strandat 466.858 kb on - strandat 466.858 kb on - strandat 466.858 kb on - strandat 466.858 kb on - strandat 466.858 kb on - strandat 466.873 kb on + strandat 466.881 kb on - strandat 466.964 kb on + strandat 466.972 kb on - strandat 466.987 kb on + strandat 466.995 kb on + strandat 466.995 kb on - strandat 466.995 kb on - strandat 466.995 kb on - strandat 466.995 kb on - strandat 466.995 kb on - strandat 466.995 kb on - strandat 467.003 kb on + strandat 467.271 kb on - strandat 467.287 kb on - strandat 467.324 kb on + strand, within CSW01_16890at 467.478 kb on + strand, within CSW01_16890at 467.478 kb on + strand, within CSW01_16890at 467.484 kb on - strand, within CSW01_16890at 467.575 kb on + strand, within CSW01_16890at 467.602 kb on - strand, within CSW01_16890at 467.649 kb on + strand, within CSW01_16890at 467.742 kb on + strand, within CSW01_16890at 467.762 kb on + strand, within CSW01_16890at 467.837 kb on - strand, within CSW01_16890at 467.851 kb on + strand, within CSW01_16890at 467.858 kb on + strand, within CSW01_16890at 467.908 kb on - strand, within CSW01_16890at 467.992 kb on + strand, within CSW01_16890at 467.997 kb on + strand, within CSW01_16890at 468.060 kb on - strand, within CSW01_16890

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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462,854 + CSW01_16880 0.53 +0.5
462,854 + CSW01_16880 0.53 -0.1
462,961 + CSW01_16880 0.58 +0.2
462,964 + CSW01_16880 0.59 -0.8
462,964 + CSW01_16880 0.59 -0.5
462,964 + CSW01_16880 0.59 +0.4
462,971 + CSW01_16880 0.59 +1.0
462,972 - CSW01_16880 0.59 -2.0
462,979 - CSW01_16880 0.59 +1.4
463,039 - CSW01_16880 0.63 +0.6
463,131 + CSW01_16880 0.68 +0.7
463,268 + CSW01_16880 0.75 +0.4
463,324 + CSW01_16880 0.78 +1.6
463,356 + CSW01_16880 0.80 +0.4
463,381 + CSW01_16880 0.81 -0.4
463,444 + CSW01_16880 0.84 -0.5
463,471 + CSW01_16880 0.86 +0.2
463,580 + -0.0
463,588 - +0.0
463,588 - +1.1
463,588 - +1.0
463,588 - -2.1
463,736 - -0.5
463,761 - -0.5
463,784 + +0.2
463,792 - -0.3
463,792 - +0.5
463,897 + +1.0
463,905 - +0.1
463,917 + +0.5
463,925 - +1.6
463,940 - -1.1
463,983 + -0.2
463,991 - +0.1
463,993 + +0.6
464,056 - -0.6
464,157 + CSW01_16885 0.10 +0.4
464,163 + CSW01_16885 0.10 -1.0
464,163 + CSW01_16885 0.10 +0.7
464,163 + CSW01_16885 0.10 +0.0
464,163 + CSW01_16885 0.10 +0.8
464,165 - CSW01_16885 0.10 -0.3
464,171 - CSW01_16885 0.10 +1.7
464,171 - CSW01_16885 0.10 +0.7
464,171 - CSW01_16885 0.10 +1.2
464,263 - CSW01_16885 0.13 +0.5
464,265 + CSW01_16885 0.13 +0.0
464,314 + CSW01_16885 0.15 +0.1
464,359 + CSW01_16885 0.16 +1.0
464,400 + CSW01_16885 0.18 +0.4
464,499 - CSW01_16885 0.21 +1.9
464,542 - CSW01_16885 0.22 +1.2
464,542 - CSW01_16885 0.22 -0.2
464,659 + CSW01_16885 0.26 +0.4
464,744 - CSW01_16885 0.28 -0.4
464,744 - CSW01_16885 0.28 -0.5
464,744 - CSW01_16885 0.28 +1.5
464,764 - CSW01_16885 0.29 -1.3
464,764 - CSW01_16885 0.29 +0.1
464,772 + CSW01_16885 0.29 +0.9
464,835 + CSW01_16885 0.31 +0.2
464,892 + CSW01_16885 0.33 +0.3
464,895 - CSW01_16885 0.33 +0.5
465,100 + CSW01_16885 0.39 +0.3
465,108 - CSW01_16885 0.39 +0.2
465,143 + CSW01_16885 0.40 +1.0
465,288 - CSW01_16885 0.45 +0.7
465,298 - CSW01_16885 0.45 +1.3
465,370 + CSW01_16885 0.47 +0.1
465,543 + CSW01_16885 0.53 +0.8
465,551 - CSW01_16885 0.53 +0.3
465,554 + CSW01_16885 0.53 +0.2
465,630 - CSW01_16885 0.55 +0.7
465,654 + CSW01_16885 0.56 +1.5
465,730 + CSW01_16885 0.59 +1.5
465,736 + CSW01_16885 0.59 -0.7
465,759 + CSW01_16885 0.59 +1.6
465,812 + CSW01_16885 0.61 -0.2
465,812 + CSW01_16885 0.61 -0.3
465,820 - CSW01_16885 0.61 -1.0
465,894 - CSW01_16885 0.64 +0.4
465,906 - CSW01_16885 0.64 -0.8
465,906 - CSW01_16885 0.64 +0.2
466,056 + CSW01_16885 0.69 +0.5
466,147 - CSW01_16885 0.71 +0.4
466,175 + CSW01_16885 0.72 +2.4
466,180 + CSW01_16885 0.72 +0.4
466,253 - CSW01_16885 0.75 -0.6
466,365 - CSW01_16885 0.78 +0.5
466,365 - CSW01_16885 0.78 +0.8
466,365 - CSW01_16885 0.78 +0.2
466,433 + CSW01_16885 0.80 +0.0
466,493 + CSW01_16885 0.82 +0.2
466,514 - CSW01_16885 0.83 +3.6
466,537 + CSW01_16885 0.83 -2.3
466,537 + CSW01_16885 0.83 +1.4
466,537 + CSW01_16885 0.83 -0.8
466,537 + CSW01_16885 0.83 -0.2
466,537 + CSW01_16885 0.83 +1.0
466,545 - CSW01_16885 0.84 -0.5
466,545 - CSW01_16885 0.84 +0.4
466,554 - CSW01_16885 0.84 +0.1
466,564 - CSW01_16885 0.84 -0.4
466,653 + CSW01_16885 0.87 +0.7
466,660 + CSW01_16885 0.87 +0.6
466,660 + CSW01_16885 0.87 +0.2
466,660 + CSW01_16885 0.87 -0.4
466,661 - CSW01_16885 0.87 +0.0
466,666 - CSW01_16885 0.87 +1.7
466,735 - CSW01_16885 0.90 -1.0
466,735 - CSW01_16885 0.90 +1.0
466,850 + +0.2
466,850 + +0.6
466,858 - -0.4
466,858 - -3.1
466,858 - +1.8
466,858 - +0.5
466,858 - -0.3
466,873 + +0.2
466,881 - +1.1
466,964 + +1.3
466,972 - -0.6
466,987 + +0.4
466,995 + +0.5
466,995 - -0.1
466,995 - -0.4
466,995 - -0.8
466,995 - -0.7
466,995 - -0.4
466,995 - -0.6
467,003 + +0.3
467,271 - -0.4
467,287 - +1.5
467,324 + CSW01_16890 0.10 +1.0
467,478 + CSW01_16890 0.20 -0.3
467,478 + CSW01_16890 0.20 +0.9
467,484 - CSW01_16890 0.21 -0.4
467,575 + CSW01_16890 0.27 +0.9
467,602 - CSW01_16890 0.29 +1.8
467,649 + CSW01_16890 0.32 +0.6
467,742 + CSW01_16890 0.38 +0.5
467,762 + CSW01_16890 0.39 -0.0
467,837 - CSW01_16890 0.44 +1.0
467,851 + CSW01_16890 0.45 -1.3
467,858 + CSW01_16890 0.46 +0.7
467,908 - CSW01_16890 0.49 +0.8
467,992 + CSW01_16890 0.55 +0.4
467,997 + CSW01_16890 0.55 +0.0
468,060 - CSW01_16890 0.59 -1.2

Or see this region's nucleotide sequence