Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16785

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16775 and CSW01_16780 are separated by 183 nucleotidesCSW01_16780 and CSW01_16785 are separated by 217 nucleotidesCSW01_16785 and CSW01_16790 are separated by 67 nucleotides CSW01_16775: CSW01_16775 - N-acetyltransferase, at 431,969 to 432,484 _16775 CSW01_16780: CSW01_16780 - VOC family protein, at 432,668 to 433,081 _16780 CSW01_16785: CSW01_16785 - hypothetical protein, at 433,299 to 433,568 _16785 CSW01_16790: CSW01_16790 - IS3 family transposase, at 433,636 to 434,813 _16790 Position (kb) 433 434Strain fitness (log2 ratio) -2 -1 0 1 2at 432.345 kb on + strand, within CSW01_16775at 432.350 kb on + strand, within CSW01_16775at 432.605 kb on - strandat 433.294 kb on + strandat 433.339 kb on - strand, within CSW01_16785at 433.355 kb on + strand, within CSW01_16785at 433.461 kb on - strand, within CSW01_16785at 433.479 kb on + strand, within CSW01_16785at 433.486 kb on - strand, within CSW01_16785at 433.535 kb on - strand, within CSW01_16785

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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432,345 + CSW01_16775 0.73 +1.0
432,350 + CSW01_16775 0.74 -0.6
432,605 - -0.0
433,294 + -0.3
433,339 - CSW01_16785 0.15 -0.1
433,355 + CSW01_16785 0.21 -2.3
433,461 - CSW01_16785 0.60 +2.0
433,479 + CSW01_16785 0.67 -1.6
433,486 - CSW01_16785 0.69 -0.6
433,535 - CSW01_16785 0.87 -0.5

Or see this region's nucleotide sequence