Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16630

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_16615 and CSW01_16620 are separated by 127 nucleotidesCSW01_16620 and CSW01_16625 are separated by 56 nucleotidesCSW01_16625 and CSW01_16630 are separated by 114 nucleotidesCSW01_16630 and CSW01_16635 are separated by 43 nucleotidesCSW01_16635 and CSW01_16640 are separated by 62 nucleotidesCSW01_16640 and CSW01_16645 overlap by 4 nucleotides CSW01_16615: CSW01_16615 - type II toxin-antitoxin system RelE/ParE family toxin, at 418,419 to 418,709 _16615 CSW01_16620: CSW01_16620 - N-acetyltransferase, at 418,837 to 419,292 _16620 CSW01_16625: CSW01_16625 - acetyltransferase, at 419,349 to 419,471 _16625 CSW01_16630: CSW01_16630 - DUF645 domain-containing protein, at 419,586 to 419,766 _16630 CSW01_16635: CSW01_16635 - hypothetical protein, at 419,810 to 419,905 _16635 CSW01_16640: CSW01_16640 - N-acetyltransferase, at 419,968 to 420,465 _16640 CSW01_16645: CSW01_16645 - DUF1778 domain-containing protein, at 420,462 to 420,734 _16645 Position (kb) 419 420Strain fitness (log2 ratio) -1 0 1at 418.609 kb on - strand, within CSW01_16615at 419.473 kb on - strandat 419.695 kb on - strand, within CSW01_16630at 419.704 kb on - strand, within CSW01_16630at 419.870 kb on + strand, within CSW01_16635

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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418,609 - CSW01_16615 0.65 +0.5
419,473 - +0.5
419,695 - CSW01_16630 0.60 +0.8
419,704 - CSW01_16630 0.65 +0.0
419,870 + CSW01_16635 0.62 +1.4

Or see this region's nucleotide sequence