Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15305 and CSW01_15310 are separated by 94 nucleotides CSW01_15310 and CSW01_15315 are separated by 216 nucleotides CSW01_15315 and CSW01_15320 are separated by 286 nucleotides CSW01_15320 and CSW01_15325 are separated by 43 nucleotides CSW01_15325 and CSW01_15330 are separated by 43 nucleotides
CSW01_15305: CSW01_15305 - XRE family transcriptional regulator, at 289,723 to 290,070
_15305
CSW01_15310: CSW01_15310 - exoribonuclease R, at 290,165 to 290,599
_15310
CSW01_15315: CSW01_15315 - carbonic anhydrase, at 290,816 to 291,535
_15315
CSW01_15320: CSW01_15320 - IS200/IS605 family transposase IS1004, at 291,822 to 292,259
_15320
CSW01_15325: CSW01_15325 - rfbP protein, at 292,303 to 292,395
_15325
CSW01_15330: CSW01_15330 - glycine dehydrogenase (decarboxylating), at 292,439 to 295,303
_15330
Position (kb) 290
291
292 Strain fitness (log2 ratio) -1
0
1
2 at 289.872 kb on + strand, within CSW01_15305 at 289.892 kb on + strand, within CSW01_15305 at 289.913 kb on - strand, within CSW01_15305 at 289.960 kb on + strand, within CSW01_15305 at 289.960 kb on + strand, within CSW01_15305 at 289.960 kb on + strand, within CSW01_15305 at 289.960 kb on + strand, within CSW01_15305 at 289.968 kb on - strand, within CSW01_15305 at 289.968 kb on - strand, within CSW01_15305 at 290.086 kb on - strand at 290.342 kb on - strand, within CSW01_15310 at 290.342 kb on - strand, within CSW01_15310 at 290.601 kb on + strand at 290.601 kb on + strand at 290.601 kb on + strand at 290.609 kb on - strand at 290.762 kb on - strand at 290.778 kb on - strand at 290.865 kb on + strand at 290.887 kb on + strand at 290.887 kb on + strand at 290.932 kb on + strand, within CSW01_15315 at 290.979 kb on + strand, within CSW01_15315 at 290.992 kb on + strand, within CSW01_15315 at 291.037 kb on + strand, within CSW01_15315 at 291.045 kb on - strand, within CSW01_15315 at 291.045 kb on - strand, within CSW01_15315 at 291.063 kb on + strand, within CSW01_15315 at 291.084 kb on - strand, within CSW01_15315 at 291.086 kb on + strand, within CSW01_15315 at 291.105 kb on + strand, within CSW01_15315 at 291.259 kb on + strand, within CSW01_15315 at 291.259 kb on + strand, within CSW01_15315 at 291.267 kb on - strand, within CSW01_15315 at 291.267 kb on - strand, within CSW01_15315 at 291.303 kb on - strand, within CSW01_15315 at 291.360 kb on - strand, within CSW01_15315 at 291.388 kb on + strand, within CSW01_15315 at 291.402 kb on - strand, within CSW01_15315 at 291.460 kb on + strand, within CSW01_15315 at 291.460 kb on + strand, within CSW01_15315 at 291.460 kb on + strand, within CSW01_15315 at 291.468 kb on - strand at 291.544 kb on - strand at 291.637 kb on + strand at 292.364 kb on + strand, within CSW01_15325 at 292.450 kb on - strand at 292.483 kb on - strand at 292.487 kb on - strand at 292.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B remove 289,872 + CSW01_15305 0.43 +1.7 289,892 + CSW01_15305 0.49 -0.1 289,913 - CSW01_15305 0.55 +0.2 289,960 + CSW01_15305 0.68 +0.7 289,960 + CSW01_15305 0.68 +0.4 289,960 + CSW01_15305 0.68 -0.8 289,960 + CSW01_15305 0.68 -0.5 289,968 - CSW01_15305 0.70 +0.4 289,968 - CSW01_15305 0.70 -0.7 290,086 - +0.4 290,342 - CSW01_15310 0.41 -0.8 290,342 - CSW01_15310 0.41 -0.2 290,601 + -0.3 290,601 + +0.7 290,601 + -0.4 290,609 - -0.2 290,762 - +0.6 290,778 - +0.5 290,865 + +0.3 290,887 + +0.8 290,887 + +0.1 290,932 + CSW01_15315 0.16 -0.2 290,979 + CSW01_15315 0.23 +0.6 290,992 + CSW01_15315 0.24 -0.2 291,037 + CSW01_15315 0.31 -0.1 291,045 - CSW01_15315 0.32 +0.6 291,045 - CSW01_15315 0.32 +1.4 291,063 + CSW01_15315 0.34 +0.4 291,084 - CSW01_15315 0.37 +1.8 291,086 + CSW01_15315 0.38 +0.6 291,105 + CSW01_15315 0.40 -0.0 291,259 + CSW01_15315 0.62 -0.9 291,259 + CSW01_15315 0.62 +0.1 291,267 - CSW01_15315 0.63 +0.1 291,267 - CSW01_15315 0.63 +1.2 291,303 - CSW01_15315 0.68 +0.3 291,360 - CSW01_15315 0.76 -0.6 291,388 + CSW01_15315 0.79 -0.3 291,402 - CSW01_15315 0.81 +0.2 291,460 + CSW01_15315 0.89 -0.5 291,460 + CSW01_15315 0.89 +0.5 291,460 + CSW01_15315 0.89 +0.7 291,468 - +0.5 291,544 - -0.0 291,637 + +0.3 292,364 + CSW01_15325 0.66 +0.6 292,450 - +1.2 292,483 - +0.8 292,487 - -0.9 292,499 - +0.4
Or see this region's nucleotide sequence