Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15085

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15080 and CSW01_15085 are separated by 347 nucleotidesCSW01_15085 and CSW01_15090 are separated by 9 nucleotidesCSW01_15090 and CSW01_15095 are separated by 75 nucleotides CSW01_15080: CSW01_15080 - methyl-accepting chemotaxis protein HlyB, at 240,109 to 241,755 _15080 CSW01_15085: CSW01_15085 - lipase, at 242,103 to 243,041 _15085 CSW01_15090: CSW01_15090 - lipase chaperone, at 243,051 to 243,905 _15090 CSW01_15095: CSW01_15095 - protease, at 243,981 to 246,737 _15095 Position (kb) 242 243 244Strain fitness (log2 ratio) -2 -1 0 1 2at 241.164 kb on - strand, within CSW01_15080at 241.169 kb on + strand, within CSW01_15080at 241.199 kb on - strand, within CSW01_15080at 241.294 kb on + strand, within CSW01_15080at 241.393 kb on - strand, within CSW01_15080at 241.436 kb on - strand, within CSW01_15080at 241.438 kb on + strand, within CSW01_15080at 241.438 kb on + strand, within CSW01_15080at 241.453 kb on + strand, within CSW01_15080at 241.484 kb on + strand, within CSW01_15080at 241.617 kb on + strandat 241.678 kb on + strandat 241.684 kb on + strandat 241.686 kb on - strandat 241.687 kb on - strandat 241.879 kb on - strandat 242.102 kb on - strandat 242.146 kb on - strandat 242.153 kb on - strandat 242.184 kb on + strandat 242.190 kb on + strandat 242.192 kb on - strandat 242.197 kb on - strand, within CSW01_15085at 242.205 kb on - strand, within CSW01_15085at 242.211 kb on - strand, within CSW01_15085at 242.217 kb on + strand, within CSW01_15085at 242.237 kb on - strand, within CSW01_15085at 242.302 kb on + strand, within CSW01_15085at 242.314 kb on + strand, within CSW01_15085at 242.324 kb on + strand, within CSW01_15085at 242.324 kb on + strand, within CSW01_15085at 242.344 kb on - strand, within CSW01_15085at 242.348 kb on + strand, within CSW01_15085at 242.363 kb on + strand, within CSW01_15085at 242.525 kb on - strand, within CSW01_15085at 242.526 kb on - strand, within CSW01_15085at 242.540 kb on - strand, within CSW01_15085at 242.594 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.678 kb on - strand, within CSW01_15085at 242.705 kb on + strand, within CSW01_15085at 242.705 kb on + strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.740 kb on + strand, within CSW01_15085at 242.893 kb on - strand, within CSW01_15085at 242.907 kb on + strand, within CSW01_15085at 242.922 kb on - strand, within CSW01_15085at 242.945 kb on + strand, within CSW01_15085at 242.975 kb on + strandat 242.975 kb on + strandat 242.975 kb on + strandat 242.975 kb on + strandat 242.983 kb on - strandat 243.027 kb on - strandat 243.088 kb on + strandat 243.096 kb on - strandat 243.096 kb on - strandat 243.110 kb on + strandat 243.177 kb on + strand, within CSW01_15090at 243.177 kb on + strand, within CSW01_15090at 243.185 kb on - strand, within CSW01_15090at 243.219 kb on + strand, within CSW01_15090at 243.279 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.326 kb on + strand, within CSW01_15090at 243.334 kb on - strand, within CSW01_15090at 243.334 kb on - strand, within CSW01_15090at 243.348 kb on - strand, within CSW01_15090at 243.389 kb on - strand, within CSW01_15090at 243.467 kb on + strand, within CSW01_15090at 243.555 kb on + strand, within CSW01_15090at 243.577 kb on + strand, within CSW01_15090at 243.577 kb on + strand, within CSW01_15090at 243.633 kb on + strand, within CSW01_15090at 243.641 kb on - strand, within CSW01_15090at 243.672 kb on + strand, within CSW01_15090at 243.672 kb on + strand, within CSW01_15090at 243.680 kb on - strand, within CSW01_15090at 243.706 kb on - strand, within CSW01_15090at 243.706 kb on - strand, within CSW01_15090at 243.708 kb on - strand, within CSW01_15090at 243.799 kb on - strand, within CSW01_15090at 243.842 kb on + strandat 243.842 kb on - strandat 243.908 kb on - strandat 243.951 kb on - strandat 243.953 kb on + strandat 244.033 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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241,164 - CSW01_15080 0.64 -1.0
241,169 + CSW01_15080 0.64 +0.4
241,199 - CSW01_15080 0.66 +1.1
241,294 + CSW01_15080 0.72 +1.2
241,393 - CSW01_15080 0.78 -0.5
241,436 - CSW01_15080 0.81 -0.5
241,438 + CSW01_15080 0.81 -0.1
241,438 + CSW01_15080 0.81 +0.4
241,453 + CSW01_15080 0.82 +1.0
241,484 + CSW01_15080 0.83 -2.4
241,617 + -0.5
241,678 + +0.9
241,684 + +0.1
241,686 - -1.5
241,687 - +0.4
241,879 - -0.4
242,102 - +0.1
242,146 - -2.0
242,153 - -0.7
242,184 + +0.6
242,190 + -1.0
242,192 - +0.4
242,197 - CSW01_15085 0.10 +0.2
242,205 - CSW01_15085 0.11 +0.3
242,211 - CSW01_15085 0.12 +0.5
242,217 + CSW01_15085 0.12 +0.9
242,237 - CSW01_15085 0.14 +1.1
242,302 + CSW01_15085 0.21 -0.0
242,314 + CSW01_15085 0.22 +0.7
242,324 + CSW01_15085 0.24 +0.0
242,324 + CSW01_15085 0.24 -0.5
242,344 - CSW01_15085 0.26 -0.5
242,348 + CSW01_15085 0.26 +0.1
242,363 + CSW01_15085 0.28 +0.5
242,525 - CSW01_15085 0.45 +1.3
242,526 - CSW01_15085 0.45 +1.1
242,540 - CSW01_15085 0.47 -0.4
242,594 - CSW01_15085 0.52 +0.9
242,600 - CSW01_15085 0.53 -0.6
242,600 - CSW01_15085 0.53 +0.9
242,600 - CSW01_15085 0.53 +0.0
242,600 - CSW01_15085 0.53 +1.6
242,600 - CSW01_15085 0.53 -0.6
242,678 - CSW01_15085 0.61 +0.2
242,705 + CSW01_15085 0.64 +0.3
242,705 + CSW01_15085 0.64 -0.2
242,713 - CSW01_15085 0.65 +0.2
242,713 - CSW01_15085 0.65 +1.0
242,713 - CSW01_15085 0.65 +0.1
242,740 + CSW01_15085 0.68 -0.0
242,893 - CSW01_15085 0.84 +1.8
242,907 + CSW01_15085 0.86 -0.3
242,922 - CSW01_15085 0.87 +0.8
242,945 + CSW01_15085 0.90 -0.2
242,975 + +0.4
242,975 + +0.1
242,975 + -1.4
242,975 + -0.4
242,983 - +0.7
243,027 - +0.8
243,088 + +0.9
243,096 - -0.6
243,096 - +0.1
243,110 + +0.5
243,177 + CSW01_15090 0.15 +0.4
243,177 + CSW01_15090 0.15 -0.1
243,185 - CSW01_15090 0.16 +0.0
243,219 + CSW01_15090 0.20 -0.5
243,279 + CSW01_15090 0.27 +2.3
243,326 + CSW01_15090 0.32 +0.4
243,326 + CSW01_15090 0.32 -0.5
243,326 + CSW01_15090 0.32 +0.2
243,326 + CSW01_15090 0.32 -1.1
243,326 + CSW01_15090 0.32 +0.7
243,326 + CSW01_15090 0.32 -0.1
243,334 - CSW01_15090 0.33 -0.3
243,334 - CSW01_15090 0.33 +0.3
243,348 - CSW01_15090 0.35 +1.5
243,389 - CSW01_15090 0.40 -0.2
243,467 + CSW01_15090 0.49 +0.2
243,555 + CSW01_15090 0.59 -0.8
243,577 + CSW01_15090 0.62 -0.2
243,577 + CSW01_15090 0.62 +0.2
243,633 + CSW01_15090 0.68 +0.4
243,641 - CSW01_15090 0.69 +1.6
243,672 + CSW01_15090 0.73 +0.8
243,672 + CSW01_15090 0.73 +0.1
243,680 - CSW01_15090 0.74 +2.3
243,706 - CSW01_15090 0.77 +0.6
243,706 - CSW01_15090 0.77 -0.9
243,708 - CSW01_15090 0.77 +0.3
243,799 - CSW01_15090 0.87 -0.6
243,842 + +1.5
243,842 - -0.1
243,908 - -1.2
243,951 - +1.2
243,953 + +0.7
244,033 + +0.5

Or see this region's nucleotide sequence