Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14935

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14930 and CSW01_14935 overlap by 1 nucleotidesCSW01_14935 and CSW01_14940 are separated by 37 nucleotides CSW01_14930: CSW01_14930 - response regulator, at 205,604 to 206,608 _14930 CSW01_14935: CSW01_14935 - hypothetical protein, at 206,608 to 207,054 _14935 CSW01_14940: CSW01_14940 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 207,092 to 208,576 _14940 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2 3at 205.616 kb on + strandat 205.624 kb on - strandat 205.683 kb on + strandat 205.686 kb on - strandat 205.688 kb on + strandat 205.736 kb on - strand, within CSW01_14930at 205.743 kb on + strand, within CSW01_14930at 205.751 kb on - strand, within CSW01_14930at 205.969 kb on - strand, within CSW01_14930at 206.058 kb on - strand, within CSW01_14930at 206.088 kb on + strand, within CSW01_14930at 206.105 kb on + strand, within CSW01_14930at 206.119 kb on - strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.130 kb on + strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.138 kb on - strand, within CSW01_14930at 206.159 kb on - strand, within CSW01_14930at 206.193 kb on - strand, within CSW01_14930at 206.242 kb on - strand, within CSW01_14930at 206.253 kb on + strand, within CSW01_14930at 206.315 kb on + strand, within CSW01_14930at 206.324 kb on - strand, within CSW01_14930at 206.377 kb on - strand, within CSW01_14930at 206.378 kb on - strand, within CSW01_14930at 206.487 kb on + strand, within CSW01_14930at 206.487 kb on + strand, within CSW01_14930at 206.488 kb on - strand, within CSW01_14930at 206.495 kb on - strand, within CSW01_14930at 206.602 kb on + strandat 206.610 kb on - strandat 206.610 kb on - strandat 206.621 kb on - strandat 206.732 kb on - strand, within CSW01_14935at 206.744 kb on - strand, within CSW01_14935at 206.894 kb on + strand, within CSW01_14935at 206.956 kb on - strand, within CSW01_14935at 206.957 kb on - strand, within CSW01_14935at 207.099 kb on + strandat 207.099 kb on + strandat 207.099 kb on - strandat 207.129 kb on + strandat 207.185 kb on - strandat 207.185 kb on - strandat 207.249 kb on - strand, within CSW01_14940at 207.322 kb on - strand, within CSW01_14940at 207.413 kb on + strand, within CSW01_14940at 207.413 kb on + strand, within CSW01_14940at 207.434 kb on + strand, within CSW01_14940at 207.435 kb on - strand, within CSW01_14940at 207.440 kb on - strand, within CSW01_14940at 207.442 kb on + strand, within CSW01_14940at 207.449 kb on - strand, within CSW01_14940at 207.492 kb on - strand, within CSW01_14940at 207.540 kb on - strand, within CSW01_14940at 207.590 kb on - strand, within CSW01_14940at 207.648 kb on - strand, within CSW01_14940at 207.657 kb on + strand, within CSW01_14940at 207.670 kb on - strand, within CSW01_14940at 207.705 kb on + strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.712 kb on - strand, within CSW01_14940at 207.720 kb on + strand, within CSW01_14940at 207.756 kb on - strand, within CSW01_14940at 207.756 kb on - strand, within CSW01_14940at 207.791 kb on - strand, within CSW01_14940at 207.822 kb on - strand, within CSW01_14940at 207.853 kb on - strand, within CSW01_14940at 207.868 kb on + strand, within CSW01_14940at 207.896 kb on + strand, within CSW01_14940at 207.921 kb on - strand, within CSW01_14940at 207.923 kb on + strand, within CSW01_14940at 207.926 kb on - strand, within CSW01_14940at 207.931 kb on - strand, within CSW01_14940at 207.931 kb on - strand, within CSW01_14940at 207.933 kb on + strand, within CSW01_14940at 207.935 kb on + strand, within CSW01_14940at 207.948 kb on + strand, within CSW01_14940at 207.973 kb on - strand, within CSW01_14940at 208.041 kb on + strand, within CSW01_14940at 208.046 kb on - strand, within CSW01_14940

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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205,616 + -0.3
205,624 - +0.4
205,683 + +2.1
205,686 - -0.0
205,688 + +0.5
205,736 - CSW01_14930 0.13 +0.5
205,743 + CSW01_14930 0.14 +1.2
205,751 - CSW01_14930 0.15 -0.1
205,969 - CSW01_14930 0.36 -0.2
206,058 - CSW01_14930 0.45 -0.4
206,088 + CSW01_14930 0.48 +0.4
206,105 + CSW01_14930 0.50 +0.4
206,119 - CSW01_14930 0.51 -0.8
206,130 + CSW01_14930 0.52 +1.2
206,130 + CSW01_14930 0.52 +0.4
206,130 + CSW01_14930 0.52 +0.1
206,130 + CSW01_14930 0.52 -0.2
206,130 + CSW01_14930 0.52 +0.0
206,130 + CSW01_14930 0.52 -1.2
206,130 + CSW01_14930 0.52 -0.2
206,130 + CSW01_14930 0.52 -0.4
206,130 + CSW01_14930 0.52 +0.7
206,130 + CSW01_14930 0.52 +0.2
206,138 - CSW01_14930 0.53 +0.2
206,138 - CSW01_14930 0.53 -0.7
206,138 - CSW01_14930 0.53 +0.2
206,138 - CSW01_14930 0.53 +0.0
206,138 - CSW01_14930 0.53 -0.8
206,159 - CSW01_14930 0.55 +0.0
206,193 - CSW01_14930 0.59 +1.0
206,242 - CSW01_14930 0.63 +0.4
206,253 + CSW01_14930 0.65 +1.2
206,315 + CSW01_14930 0.71 +0.3
206,324 - CSW01_14930 0.72 +0.4
206,377 - CSW01_14930 0.77 -0.3
206,378 - CSW01_14930 0.77 +0.9
206,487 + CSW01_14930 0.88 +0.2
206,487 + CSW01_14930 0.88 +0.8
206,488 - CSW01_14930 0.88 +0.4
206,495 - CSW01_14930 0.89 +1.2
206,602 + -0.1
206,610 - -2.5
206,610 - +0.8
206,621 - -1.0
206,732 - CSW01_14935 0.28 +0.1
206,744 - CSW01_14935 0.30 +3.0
206,894 + CSW01_14935 0.64 +0.1
206,956 - CSW01_14935 0.78 -0.6
206,957 - CSW01_14935 0.78 +0.6
207,099 + -0.7
207,099 + +0.1
207,099 - -0.1
207,129 + -2.1
207,185 - -0.7
207,185 - +1.7
207,249 - CSW01_14940 0.11 -0.2
207,322 - CSW01_14940 0.15 +0.4
207,413 + CSW01_14940 0.22 -0.6
207,413 + CSW01_14940 0.22 -0.2
207,434 + CSW01_14940 0.23 +0.7
207,435 - CSW01_14940 0.23 -0.7
207,440 - CSW01_14940 0.23 +0.5
207,442 + CSW01_14940 0.24 +0.6
207,449 - CSW01_14940 0.24 -0.2
207,492 - CSW01_14940 0.27 -0.7
207,540 - CSW01_14940 0.30 -0.3
207,590 - CSW01_14940 0.34 +0.0
207,648 - CSW01_14940 0.37 -2.5
207,657 + CSW01_14940 0.38 -0.0
207,670 - CSW01_14940 0.39 +0.7
207,705 + CSW01_14940 0.41 +1.1
207,712 - CSW01_14940 0.42 +0.5
207,712 - CSW01_14940 0.42 -0.2
207,712 - CSW01_14940 0.42 +0.7
207,720 + CSW01_14940 0.42 +0.6
207,756 - CSW01_14940 0.45 +0.1
207,756 - CSW01_14940 0.45 +0.2
207,791 - CSW01_14940 0.47 +0.2
207,822 - CSW01_14940 0.49 +0.1
207,853 - CSW01_14940 0.51 -0.0
207,868 + CSW01_14940 0.52 +1.3
207,896 + CSW01_14940 0.54 +0.2
207,921 - CSW01_14940 0.56 +0.6
207,923 + CSW01_14940 0.56 +0.1
207,926 - CSW01_14940 0.56 -0.9
207,931 - CSW01_14940 0.56 +0.1
207,931 - CSW01_14940 0.56 -0.7
207,933 + CSW01_14940 0.57 +0.1
207,935 + CSW01_14940 0.57 +0.2
207,948 + CSW01_14940 0.58 -0.6
207,973 - CSW01_14940 0.59 -0.0
208,041 + CSW01_14940 0.64 +0.3
208,046 - CSW01_14940 0.64 -0.9

Or see this region's nucleotide sequence