Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14705

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14700 and CSW01_14705 are separated by 425 nucleotidesCSW01_14705 and CSW01_14710 are separated by 407 nucleotides CSW01_14700: CSW01_14700 - MFS transporter, at 151,330 to 152,688 _14700 CSW01_14705: CSW01_14705 - DUF3316 domain-containing protein, at 153,114 to 153,461 _14705 CSW01_14710: CSW01_14710 - Spindolin, at 153,869 to 155,077 _14710 Position (kb) 153 154Strain fitness (log2 ratio) -1 0 1at 152.143 kb on + strand, within CSW01_14700at 152.145 kb on + strand, within CSW01_14700at 152.181 kb on - strand, within CSW01_14700at 152.182 kb on + strand, within CSW01_14700at 152.203 kb on + strand, within CSW01_14700at 152.226 kb on - strand, within CSW01_14700at 152.253 kb on + strand, within CSW01_14700at 152.271 kb on - strand, within CSW01_14700at 152.271 kb on - strand, within CSW01_14700at 152.271 kb on - strand, within CSW01_14700at 152.271 kb on - strand, within CSW01_14700at 152.286 kb on - strand, within CSW01_14700at 152.333 kb on - strand, within CSW01_14700at 152.342 kb on + strand, within CSW01_14700at 152.350 kb on - strand, within CSW01_14700at 152.360 kb on + strand, within CSW01_14700at 152.386 kb on + strand, within CSW01_14700at 152.386 kb on + strand, within CSW01_14700at 152.399 kb on - strand, within CSW01_14700at 152.399 kb on - strand, within CSW01_14700at 152.399 kb on - strand, within CSW01_14700at 152.399 kb on - strand, within CSW01_14700at 152.415 kb on + strand, within CSW01_14700at 152.423 kb on - strand, within CSW01_14700at 152.423 kb on - strand, within CSW01_14700at 152.465 kb on - strand, within CSW01_14700at 152.490 kb on + strand, within CSW01_14700at 152.526 kb on + strand, within CSW01_14700at 152.635 kb on - strandat 152.637 kb on - strandat 152.637 kb on - strandat 152.669 kb on + strandat 152.677 kb on - strandat 152.678 kb on + strandat 152.712 kb on + strandat 152.713 kb on + strandat 152.713 kb on + strandat 152.741 kb on + strandat 152.741 kb on + strandat 152.741 kb on + strandat 152.749 kb on - strandat 152.749 kb on - strandat 152.749 kb on - strandat 152.749 kb on - strandat 152.749 kb on - strandat 152.749 kb on - strandat 153.066 kb on + strandat 153.066 kb on - strandat 153.154 kb on + strand, within CSW01_14705at 153.215 kb on + strand, within CSW01_14705at 153.250 kb on + strand, within CSW01_14705at 153.258 kb on - strand, within CSW01_14705at 153.265 kb on + strand, within CSW01_14705at 153.270 kb on + strand, within CSW01_14705at 153.294 kb on + strand, within CSW01_14705at 153.301 kb on + strand, within CSW01_14705at 153.309 kb on - strand, within CSW01_14705at 153.342 kb on - strand, within CSW01_14705at 153.382 kb on + strand, within CSW01_14705at 153.390 kb on - strand, within CSW01_14705at 153.540 kb on - strandat 153.575 kb on + strandat 153.583 kb on - strandat 153.583 kb on - strandat 153.656 kb on + strandat 153.660 kb on - strandat 153.720 kb on + strandat 153.720 kb on + strandat 153.730 kb on + strandat 153.739 kb on + strandat 153.747 kb on - strandat 153.747 kb on - strandat 153.907 kb on - strandat 153.952 kb on - strandat 153.973 kb on + strandat 153.981 kb on - strandat 154.088 kb on - strand, within CSW01_14710at 154.117 kb on - strand, within CSW01_14710at 154.357 kb on + strand, within CSW01_14710at 154.375 kb on + strand, within CSW01_14710

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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152,143 + CSW01_14700 0.60 +0.4
152,145 + CSW01_14700 0.60 +0.1
152,181 - CSW01_14700 0.63 -0.0
152,182 + CSW01_14700 0.63 +0.9
152,203 + CSW01_14700 0.64 +1.0
152,226 - CSW01_14700 0.66 +0.1
152,253 + CSW01_14700 0.68 +0.4
152,271 - CSW01_14700 0.69 -0.8
152,271 - CSW01_14700 0.69 +0.5
152,271 - CSW01_14700 0.69 +0.1
152,271 - CSW01_14700 0.69 +0.0
152,286 - CSW01_14700 0.70 +0.5
152,333 - CSW01_14700 0.74 +0.3
152,342 + CSW01_14700 0.74 +0.6
152,350 - CSW01_14700 0.75 +0.4
152,360 + CSW01_14700 0.76 +0.2
152,386 + CSW01_14700 0.78 -0.4
152,386 + CSW01_14700 0.78 -0.5
152,399 - CSW01_14700 0.79 -0.1
152,399 - CSW01_14700 0.79 +0.3
152,399 - CSW01_14700 0.79 +0.1
152,399 - CSW01_14700 0.79 -0.1
152,415 + CSW01_14700 0.80 +0.3
152,423 - CSW01_14700 0.80 +0.3
152,423 - CSW01_14700 0.80 +0.5
152,465 - CSW01_14700 0.84 +0.7
152,490 + CSW01_14700 0.85 +1.2
152,526 + CSW01_14700 0.88 -0.9
152,635 - +0.2
152,637 - +1.3
152,637 - -0.4
152,669 + -0.0
152,677 - +0.1
152,678 + -0.1
152,712 + -1.1
152,713 + -0.3
152,713 + +0.0
152,741 + +0.7
152,741 + +0.3
152,741 + +0.6
152,749 - +0.5
152,749 - +0.1
152,749 - -0.2
152,749 - -0.5
152,749 - +1.3
152,749 - -0.0
153,066 + +1.7
153,066 - +0.3
153,154 + CSW01_14705 0.11 +1.2
153,215 + CSW01_14705 0.29 +0.2
153,250 + CSW01_14705 0.39 -1.0
153,258 - CSW01_14705 0.41 -1.5
153,265 + CSW01_14705 0.43 -0.8
153,270 + CSW01_14705 0.45 +0.4
153,294 + CSW01_14705 0.52 +0.2
153,301 + CSW01_14705 0.54 -0.0
153,309 - CSW01_14705 0.56 +1.0
153,342 - CSW01_14705 0.66 +0.4
153,382 + CSW01_14705 0.77 +0.6
153,390 - CSW01_14705 0.79 +1.1
153,540 - +0.1
153,575 + -0.1
153,583 - +0.9
153,583 - +0.2
153,656 + +0.7
153,660 - +0.5
153,720 + +0.5
153,720 + +0.8
153,730 + -0.2
153,739 + +0.2
153,747 - -0.1
153,747 - +0.5
153,907 - +0.9
153,952 - +0.2
153,973 + -0.6
153,981 - -0.3
154,088 - CSW01_14710 0.18 -0.2
154,117 - CSW01_14710 0.21 +1.7
154,357 + CSW01_14710 0.40 +0.1
154,375 + CSW01_14710 0.42 +0.5

Or see this region's nucleotide sequence