Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14280

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14275 and CSW01_14280 overlap by 1 nucleotidesCSW01_14280 and CSW01_14285 are separated by 134 nucleotides CSW01_14275: CSW01_14275 - HlyD family secretion protein, at 54,928 to 56,058 _14275 CSW01_14280: CSW01_14280 - DUF3302 domain-containing protein, at 56,058 to 56,447 _14280 CSW01_14285: CSW01_14285 - GGDEF domain-containing protein, at 56,582 to 58,162 _14285 Position (kb) 56 57Strain fitness (log2 ratio) -1 0 1 2at 55.134 kb on - strand, within CSW01_14275at 55.149 kb on - strand, within CSW01_14275at 55.198 kb on - strand, within CSW01_14275at 55.283 kb on + strand, within CSW01_14275at 55.286 kb on - strand, within CSW01_14275at 55.291 kb on - strand, within CSW01_14275at 55.331 kb on + strand, within CSW01_14275at 55.432 kb on + strand, within CSW01_14275at 55.445 kb on - strand, within CSW01_14275at 55.447 kb on + strand, within CSW01_14275at 55.519 kb on - strand, within CSW01_14275at 55.650 kb on - strand, within CSW01_14275at 55.703 kb on - strand, within CSW01_14275at 55.704 kb on - strand, within CSW01_14275at 55.710 kb on - strand, within CSW01_14275at 55.722 kb on + strand, within CSW01_14275at 55.790 kb on + strand, within CSW01_14275at 55.791 kb on - strand, within CSW01_14275at 55.796 kb on - strand, within CSW01_14275at 55.797 kb on - strand, within CSW01_14275at 55.896 kb on + strand, within CSW01_14275at 55.960 kb on - strandat 55.967 kb on - strandat 56.030 kb on + strandat 56.103 kb on - strand, within CSW01_14280at 56.130 kb on + strand, within CSW01_14280at 56.226 kb on + strand, within CSW01_14280at 56.249 kb on - strand, within CSW01_14280at 56.386 kb on - strand, within CSW01_14280at 56.386 kb on - strand, within CSW01_14280at 56.545 kb on + strandat 56.573 kb on - strandat 56.624 kb on + strandat 56.624 kb on + strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.632 kb on - strandat 56.678 kb on + strandat 56.996 kb on + strand, within CSW01_14285at 57.010 kb on + strand, within CSW01_14285at 57.018 kb on - strand, within CSW01_14285at 57.051 kb on - strand, within CSW01_14285at 57.086 kb on - strand, within CSW01_14285at 57.257 kb on - strand, within CSW01_14285at 57.257 kb on - strand, within CSW01_14285at 57.302 kb on - strand, within CSW01_14285at 57.302 kb on - strand, within CSW01_14285at 57.368 kb on - strand, within CSW01_14285at 57.373 kb on - strand, within CSW01_14285at 57.415 kb on + strand, within CSW01_14285

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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55,134 - CSW01_14275 0.18 +0.4
55,149 - CSW01_14275 0.20 -0.5
55,198 - CSW01_14275 0.24 -0.2
55,283 + CSW01_14275 0.31 -0.5
55,286 - CSW01_14275 0.32 -1.5
55,291 - CSW01_14275 0.32 -0.3
55,331 + CSW01_14275 0.36 -0.2
55,432 + CSW01_14275 0.45 +0.3
55,445 - CSW01_14275 0.46 -0.3
55,447 + CSW01_14275 0.46 -0.1
55,519 - CSW01_14275 0.52 +0.0
55,650 - CSW01_14275 0.64 +0.5
55,703 - CSW01_14275 0.69 +0.3
55,704 - CSW01_14275 0.69 +0.4
55,710 - CSW01_14275 0.69 -1.7
55,722 + CSW01_14275 0.70 -0.2
55,790 + CSW01_14275 0.76 +0.1
55,791 - CSW01_14275 0.76 -0.0
55,796 - CSW01_14275 0.77 +0.6
55,797 - CSW01_14275 0.77 -0.2
55,896 + CSW01_14275 0.86 -0.1
55,960 - -0.5
55,967 - -0.4
56,030 + -0.4
56,103 - CSW01_14280 0.12 +0.2
56,130 + CSW01_14280 0.18 +0.1
56,226 + CSW01_14280 0.43 +0.7
56,249 - CSW01_14280 0.49 -0.2
56,386 - CSW01_14280 0.84 +0.5
56,386 - CSW01_14280 0.84 -1.7
56,545 + +0.2
56,573 - +0.6
56,624 + -0.2
56,624 + -0.2
56,632 - +0.2
56,632 - -0.1
56,632 - -0.1
56,632 - -1.1
56,678 + +0.6
56,996 + CSW01_14285 0.26 +0.5
57,010 + CSW01_14285 0.27 -0.6
57,018 - CSW01_14285 0.28 +1.8
57,051 - CSW01_14285 0.30 +0.4
57,086 - CSW01_14285 0.32 +0.9
57,257 - CSW01_14285 0.43 -0.2
57,257 - CSW01_14285 0.43 +0.4
57,302 - CSW01_14285 0.46 -0.5
57,302 - CSW01_14285 0.46 +0.9
57,368 - CSW01_14285 0.50 +0.6
57,373 - CSW01_14285 0.50 -0.2
57,415 + CSW01_14285 0.53 +0.1

Or see this region's nucleotide sequence