Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12905

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
2,761,222	-		CSW01_12900	0.74	+0.2
2,761,235	-		CSW01_12900	0.74	+0.0
2,761,235	-		CSW01_12900	0.74	+0.3
2,761,235	-		CSW01_12900	0.74	+0.7
2,761,241	+		CSW01_12900	0.74	+0.3
2,761,260	+		CSW01_12900	0.75	+0.4
2,761,260	+		CSW01_12900	0.75	+0.3
2,761,260	+		CSW01_12900	0.75	+0.4
2,761,260	+		CSW01_12900	0.75	+0.6
2,761,268	-		CSW01_12900	0.75	+0.3
2,761,268	-		CSW01_12900	0.75	+0.6
2,761,282	+		CSW01_12900	0.75	+0.7
2,761,282	+		CSW01_12900	0.75	+0.2
2,761,285	-		CSW01_12900	0.75	-0.8
2,761,290	-		CSW01_12900	0.75	-0.3
2,761,290	-		CSW01_12900	0.75	+0.7
2,761,290	-		CSW01_12900	0.75	+0.5
2,761,295	-		CSW01_12900	0.76	+0.0
2,761,309	-		CSW01_12900	0.76	+0.7
2,761,316	-		CSW01_12900	0.76	-1.1
2,761,357	-		CSW01_12900	0.77	-1.0
2,761,357	-		CSW01_12900	0.77	+0.5
2,761,363	+		CSW01_12900	0.77	+0.0
2,761,409	+		CSW01_12900	0.79	+0.3
2,761,432	-		CSW01_12900	0.79	+0.5
2,761,454	-		CSW01_12900	0.80	+0.4
2,761,465	-		CSW01_12900	0.80	-1.6
2,761,508	-		CSW01_12900	0.81	-1.1
2,761,536	+		CSW01_12900	0.82	+0.3
2,761,544	-		CSW01_12900	0.82	-0.2
2,761,556	-		CSW01_12900	0.83	+1.1
2,761,663	-		CSW01_12900	0.85	-0.6
2,761,736	+		CSW01_12900	0.87	-1.2
2,761,749	-		CSW01_12900	0.88	+0.3
2,761,831	+		CSW01_12900	0.90	+0.6
2,761,862	+				+0.1
2,761,862	+				-0.2
2,761,870	-				-1.1
2,761,870	-				+0.1
2,761,870	-				+0.1
2,761,896	-				+0.8
2,761,936	+				-0.1
2,762,056	+				+0.7
2,762,064	-				-1.7
2,762,064	-				-0.7
2,762,138	-				+0.1
2,762,183	+				-0.9
2,762,298	-				-0.1
2,762,349	+				+1.0
2,762,376	+				-0.2
2,762,376	+				-0.4
2,762,384	-				+0.4
2,762,399	-		CSW01_12905	0.11	-1.2
2,762,435	+		CSW01_12905	0.13	-0.4
2,762,499	-		CSW01_12905	0.17	-0.3
2,762,555	-		CSW01_12905	0.20	-2.5
2,762,640	+		CSW01_12905	0.25	-0.5
2,762,659	+		CSW01_12905	0.26	-0.7
2,762,678	-		CSW01_12905	0.27	+1.1
2,762,703	-		CSW01_12905	0.28	+0.6
2,762,739	+		CSW01_12905	0.30	+0.7
2,762,741	+		CSW01_12905	0.30	+0.0
2,762,741	+		CSW01_12905	0.30	+0.1
2,762,747	-		CSW01_12905	0.31	+0.5
2,762,769	-		CSW01_12905	0.32	+0.8
2,762,769	-		CSW01_12905	0.32	+0.7
2,762,769	-		CSW01_12905	0.32	+0.6
2,762,848	-		CSW01_12905	0.36	-0.3
2,762,940	+		CSW01_12905	0.42	-2.8
2,762,943	-		CSW01_12905	0.42	-0.3
2,762,991	+		CSW01_12905	0.45	-0.9
2,763,047	+		CSW01_12905	0.48	-0.2
2,763,048	-		CSW01_12905	0.48	-0.1
2,763,073	-		CSW01_12905	0.49	+1.3
2,763,099	+		CSW01_12905	0.51	+0.0
2,763,099	+		CSW01_12905	0.51	-1.1
2,763,117	-		CSW01_12905	0.52	-0.1
2,763,127	-		CSW01_12905	0.52	+0.1
2,763,154	+		CSW01_12905	0.54	+0.1
2,763,154	+		CSW01_12905	0.54	+0.2
2,763,154	+		CSW01_12905	0.54	+0.4
2,763,156	+		CSW01_12905	0.54	-1.3
2,763,162	-		CSW01_12905	0.54	-0.3
2,763,162	-		CSW01_12905	0.54	+0.3
2,763,162	-		CSW01_12905	0.54	-0.2
2,763,164	-		CSW01_12905	0.55	+0.8
2,763,164	-		CSW01_12905	0.55	+0.5
2,763,271	-		CSW01_12905	0.61	+0.5
2,763,306	-		CSW01_12905	0.63	+0.2
2,763,306	-		CSW01_12905	0.63	-0.1
2,763,401	+		CSW01_12905	0.68	+0.7
2,763,418	+		CSW01_12905	0.69	-1.3
2,763,430	+		CSW01_12905	0.70	-0.3
2,763,456	+		CSW01_12905	0.71	+0.9
2,763,470	-		CSW01_12905	0.72	+0.2
2,763,509	+		CSW01_12905	0.74	-0.2
2,763,509	+		CSW01_12905	0.74	+0.7
2,763,517	-		CSW01_12905	0.75	-0.0
2,763,517	-		CSW01_12905	0.75	+0.5
2,763,542	+		CSW01_12905	0.76	+0.8
2,763,651	-		CSW01_12905	0.82	-0.8
2,763,693	+		CSW01_12905	0.85	-0.5
2,763,779	+		CSW01_12905	0.90	-0.3
2,763,787	-				+0.4
2,763,809	-				+0.3
2,763,818	+				+2.1
2,763,818	+				+2.2
2,763,826	-				-0.5
2,763,854	+				+0.7
2,763,884	-				+0.1
2,763,894	-				+0.7
2,763,948	-				-0.3
2,763,981	+				-0.6
2,763,989	-				+1.4
2,763,992	+				+0.0
2,764,035	+				+0.7
2,764,075	-				+1.6
2,764,100	+				-0.1
2,764,148	-				-0.4
2,764,148	-				+0.7
2,764,196	-		CSW01_12910	0.14	-0.3
2,764,245	+		CSW01_12910	0.22	-0.2
2,764,245	+		CSW01_12910	0.22	-1.7
2,764,294	-		CSW01_12910	0.30	-0.1
2,764,296	+		CSW01_12910	0.30	-0.3
2,764,297	-		CSW01_12910	0.30	+0.9
2,764,302	-		CSW01_12910	0.31	+1.2
2,764,335	-		CSW01_12910	0.36	+0.7
2,764,356	-		CSW01_12910	0.39	-0.1
2,764,363	-		CSW01_12910	0.41	+0.6
2,764,387	-		CSW01_12910	0.44	+0.5
2,764,428	+		CSW01_12910	0.51	-0.2
2,764,436	-		CSW01_12910	0.52	-1.4
2,764,495	+		CSW01_12910	0.61	+0.2
2,764,497	+		CSW01_12910	0.62	-1.0
2,764,497	+		CSW01_12910	0.62	+0.9
2,764,497	+		CSW01_12910	0.62	+0.2
2,764,497	+		CSW01_12910	0.62	-0.7
2,764,497	+		CSW01_12910	0.62	+0.2
2,764,497	+		CSW01_12910	0.62	+0.9
2,764,497	+		CSW01_12910	0.62	+0.1
2,764,497	+		CSW01_12910	0.62	+0.7
2,764,505	-		CSW01_12910	0.63	+1.2
2,764,505	-		CSW01_12910	0.63	+0.3
2,764,505	-		CSW01_12910	0.63	-1.5
2,764,505	-		CSW01_12910	0.63	+0.5
2,764,505	-		CSW01_12910	0.63	-0.3
2,764,512	+		CSW01_12910	0.64	+0.5
2,764,514	+		CSW01_12910	0.64	-0.5
2,764,541	-		CSW01_12910	0.68	-1.1
2,764,570	+		CSW01_12910	0.73	+0.5
2,764,575	+		CSW01_12910	0.74	-0.6
2,764,585	-		CSW01_12910	0.75	-0.0
2,764,585	-		CSW01_12910	0.75	+0.4
2,764,587	+		CSW01_12910	0.76	-0.6
2,764,587	+		CSW01_12910	0.76	+0.5
2,764,587	+		CSW01_12910	0.76	-0.7
2,764,587	+		CSW01_12910	0.76	+0.5
2,764,617	-		CSW01_12910	0.80	+0.1
2,764,630	-		CSW01_12910	0.82	+0.1
2,764,632	+		CSW01_12910	0.83	+0.0
2,764,634	+		CSW01_12910	0.83	+0.4
2,764,640	-		CSW01_12910	0.84	+0.7
2,764,649	+		CSW01_12910	0.85	+0.2
2,764,705	+				+0.2
2,764,713	-				+1.1
2,764,729	+				-0.6
2,764,735	-				-0.2
2,764,746	-				-0.1
2,764,779	+				-0.4
2,764,886	+		CSW01_12915	0.11	-0.1
2,764,894	-		CSW01_12915	0.13	-0.5
2,764,894	-		CSW01_12915	0.13	+0.1
2,764,900	+		CSW01_12915	0.14	+0.4
2,764,903	+		CSW01_12915	0.14	+0.9
2,764,903	+		CSW01_12915	0.14	-0.2