Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11310

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
2,401,939	+		CSW01_11300	0.87	-0.1
2,401,982	+		CSW01_11300	0.89	+1.1
2,401,990	-		CSW01_11300	0.89	+0.8
2,401,990	-		CSW01_11300	0.89	+0.8
2,402,008	-		CSW01_11300	0.89	+0.5
2,402,038	-				+0.0
2,402,042	+				-0.6
2,402,042	+				+0.0
2,402,050	-				+0.4
2,402,050	-				+0.9
2,402,082	-				+0.6
2,402,082	-				+1.6
2,402,082	-				+0.2
2,402,089	+				+0.1
2,402,161	+				+0.2
2,402,161	+				+0.3
2,402,164	-				+0.5
2,402,169	-				-0.2
2,402,190	+				+0.3
2,402,190	+				+0.0
2,402,190	+				-0.6
2,402,190	+				+1.2
2,402,195	+				-0.0
2,402,332	-				+0.1
2,402,415	+		CSW01_11305	0.27	+0.6
2,402,438	+		CSW01_11305	0.32	+0.6
2,402,477	+		CSW01_11305	0.41	+0.3
2,402,477	+		CSW01_11305	0.41	+0.2
2,402,477	+		CSW01_11305	0.41	+1.4
2,402,477	+		CSW01_11305	0.41	-0.6
2,402,485	-		CSW01_11305	0.42	+0.2
2,402,485	-		CSW01_11305	0.42	-0.2
2,402,540	-		CSW01_11305	0.55	+0.6
2,402,583	-		CSW01_11305	0.64	-1.0
2,402,642	-		CSW01_11305	0.77	+0.6
2,402,686	+		CSW01_11305	0.87	-0.4
2,402,686	-		CSW01_11305	0.87	+0.4
2,402,693	+		CSW01_11305	0.88	-0.6
2,402,694	-		CSW01_11305	0.89	-1.4
2,402,701	-				-0.4
2,402,701	-				+0.0
2,402,752	-				+0.0
2,402,752	-				-0.2
2,402,775	+				+0.2
2,402,921	+				+0.1
2,402,990	+				+0.1
2,402,990	+				+0.5
2,403,008	+				-0.7
2,403,016	-				+0.5
2,403,016	-				+0.3
2,403,032	-				+0.3
2,403,132	+				+0.3
2,403,140	-				+0.3
2,403,171	+		CSW01_11310	0.11	+0.2
2,403,235	+		CSW01_11310	0.13	+0.1
2,403,240	+		CSW01_11310	0.13	-0.2
2,403,240	+		CSW01_11310	0.13	-0.0
2,403,290	+		CSW01_11310	0.15	-0.3
2,403,301	+		CSW01_11310	0.16	-0.1
2,403,301	+		CSW01_11310	0.16	+0.3
2,403,304	+		CSW01_11310	0.16	-1.0
2,403,324	+		CSW01_11310	0.17	-0.6
2,403,324	+		CSW01_11310	0.17	+0.8
2,403,332	-		CSW01_11310	0.17	-0.2
2,403,332	-		CSW01_11310	0.17	-0.1
2,403,332	-		CSW01_11310	0.17	+1.2
2,403,371	+		CSW01_11310	0.18	-0.4
2,403,431	+		CSW01_11310	0.21	+1.0
2,403,543	+		CSW01_11310	0.25	+0.1
2,403,543	+		CSW01_11310	0.25	+1.0
2,403,543	+		CSW01_11310	0.25	+1.8
2,403,543	+		CSW01_11310	0.25	+1.1
2,403,543	+		CSW01_11310	0.25	+0.2
2,403,549	+		CSW01_11310	0.25	+0.2
2,403,551	-		CSW01_11310	0.25	+0.5
2,403,552	-		CSW01_11310	0.25	-0.7
2,403,584	-		CSW01_11310	0.26	-0.7
2,403,599	-		CSW01_11310	0.27	+2.7
2,403,603	+		CSW01_11310	0.27	-0.2
2,403,603	+		CSW01_11310	0.27	+0.9
2,403,603	+		CSW01_11310	0.27	+0.2
2,403,603	+		CSW01_11310	0.27	+0.6
2,403,608	+		CSW01_11310	0.27	-0.8
2,403,611	+		CSW01_11310	0.27	-0.6
2,403,611	+		CSW01_11310	0.27	+0.5
2,403,611	-		CSW01_11310	0.27	-0.8
2,403,611	-		CSW01_11310	0.27	-0.1
2,403,611	-		CSW01_11310	0.27	+0.3
2,403,611	-		CSW01_11310	0.27	+0.0
2,403,616	-		CSW01_11310	0.28	-0.2
2,403,616	-		CSW01_11310	0.28	-1.0
2,403,618	+		CSW01_11310	0.28	+0.2
2,403,626	+		CSW01_11310	0.28	-0.6
2,403,626	-		CSW01_11310	0.28	-2.2
2,403,693	+		CSW01_11310	0.31	+0.5
2,403,701	-		CSW01_11310	0.31	+0.1
2,403,701	-		CSW01_11310	0.31	-0.1
2,403,742	-		CSW01_11310	0.32	-0.3
2,403,844	+		CSW01_11310	0.36	-0.2
2,403,844	+		CSW01_11310	0.36	+0.1
2,403,852	-		CSW01_11310	0.37	-0.2
2,403,852	-		CSW01_11310	0.37	+2.0
2,403,852	-		CSW01_11310	0.37	+0.9
2,403,900	+		CSW01_11310	0.38	+0.3
2,403,947	+		CSW01_11310	0.40	+0.3
2,403,955	-		CSW01_11310	0.40	-0.4
2,404,058	+		CSW01_11310	0.44	-0.2
2,404,058	+		CSW01_11310	0.44	+1.6
2,404,058	+		CSW01_11310	0.44	-0.6
2,404,066	-		CSW01_11310	0.45	+0.3
2,404,068	+		CSW01_11310	0.45	+0.8
2,404,068	+		CSW01_11310	0.45	+0.5
2,404,076	-		CSW01_11310	0.45	+0.1
2,404,076	-		CSW01_11310	0.45	-1.1
2,404,076	-		CSW01_11310	0.45	+0.3
2,404,164	+		CSW01_11310	0.48	+1.0
2,404,306	-		CSW01_11310	0.54	+0.1
2,404,308	+		CSW01_11310	0.54	+0.7
2,404,308	+		CSW01_11310	0.54	+0.3
2,404,308	+		CSW01_11310	0.54	-0.2
2,404,308	+		CSW01_11310	0.54	+2.3
2,404,308	+		CSW01_11310	0.54	+1.2
2,404,308	+		CSW01_11310	0.54	-0.4
2,404,316	-		CSW01_11310	0.54	-0.0
2,404,316	-		CSW01_11310	0.54	+0.0
2,404,316	-		CSW01_11310	0.54	+0.1
2,404,316	-		CSW01_11310	0.54	+1.4
2,404,345	+		CSW01_11310	0.55	+0.2
2,404,345	+		CSW01_11310	0.55	-0.1
2,404,345	+		CSW01_11310	0.55	+0.3
2,404,345	+		CSW01_11310	0.55	-0.1
2,404,345	+		CSW01_11310	0.55	+0.3
2,404,345	+		CSW01_11310	0.55	-0.1
2,404,353	-		CSW01_11310	0.55	-0.5
2,404,353	-		CSW01_11310	0.55	+0.6
2,404,353	-		CSW01_11310	0.55	-0.0
2,404,353	-		CSW01_11310	0.55	+1.3
2,404,353	-		CSW01_11310	0.55	-1.1
2,404,353	-		CSW01_11310	0.55	+0.3
2,404,353	-		CSW01_11310	0.55	+0.8
2,404,353	-		CSW01_11310	0.55	-1.0
2,404,363	-		CSW01_11310	0.56	-0.0
2,404,520	-		CSW01_11310	0.62	-0.3
2,404,557	+		CSW01_11310	0.63	+1.8
2,404,557	+		CSW01_11310	0.63	-0.8
2,404,565	-		CSW01_11310	0.63	+0.4
2,404,565	-		CSW01_11310	0.63	-0.5
2,404,571	-		CSW01_11310	0.64	+0.6
2,404,596	+		CSW01_11310	0.65	+1.0
2,404,628	-		CSW01_11310	0.66	-0.6
2,404,662	+		CSW01_11310	0.67	+0.2
2,404,755	-		CSW01_11310	0.71	+0.3
2,404,757	+		CSW01_11310	0.71	-0.0
2,404,762	+		CSW01_11310	0.71	+1.2
2,404,810	-		CSW01_11310	0.73	+0.2
2,404,832	-		CSW01_11310	0.74	+0.9
2,404,860	+		CSW01_11310	0.75	+0.1
2,404,890	+		CSW01_11310	0.76	+0.2
2,404,932	-		CSW01_11310	0.77	+0.3
2,404,989	+		CSW01_11310	0.79	+0.0
2,404,991	-		CSW01_11310	0.80	+0.3
2,405,109	+		CSW01_11310	0.84	-0.3
2,405,199	-		CSW01_11310	0.87	-0.8
2,405,260	+		CSW01_11310	0.90	-0.2
2,405,268	-				-0.1
2,405,290	+				-0.5
2,405,383	-				-0.3
2,405,383	-				-0.3
2,405,399	+				-0.7
2,405,444	+				+1.7
2,405,452	-				-0.7
2,405,453	+				-0.1
2,405,461	-				-0.6
2,405,472	-				-0.1
2,405,474	-				-0.0
2,405,493	-				-0.4
2,405,503	-				+0.8
2,405,512	+				-0.3
2,405,512	+				+0.4
2,405,512	+				+0.9
2,405,563	+				+0.3
2,405,585	-				-0.2
2,405,676	+				+1.3
2,405,789	+				+1.7
2,405,789	+				+0.1
2,405,808	+				+0.0
2,405,886	+				+0.1
2,405,957	+				+0.4
2,405,965	-				-0.3
2,405,965	-				-0.0
2,405,965	-				-0.3
2,405,965	-				-0.0
2,406,040	+		CSW01_11315	0.10	-0.5
2,406,040	+		CSW01_11315	0.10	-0.4
2,406,040	+		CSW01_11315	0.10	+0.1
2,406,040	+		CSW01_11315	0.10	+0.7
2,406,040	+		CSW01_11315	0.10	-0.3
2,406,040	+		CSW01_11315	0.10	+0.8
2,406,040	+		CSW01_11315	0.10	+0.3
2,406,048	-		CSW01_11315	0.11	+1.0
2,406,048	-		CSW01_11315	0.11	+0.3
2,406,048	-		CSW01_11315	0.11	+0.5
2,406,048	-		CSW01_11315	0.11	+1.6
2,406,048	-		CSW01_11315	0.11	+0.7
2,406,048	-		CSW01_11315	0.11	+1.5
2,406,048	-		CSW01_11315	0.11	+0.4
2,406,048	-		CSW01_11315	0.11	+0.2
2,406,048	-		CSW01_11315	0.11	+0.3
2,406,078	-		CSW01_11315	0.14	+0.1
2,406,082	+		CSW01_11315	0.15	+0.0
2,406,082	+		CSW01_11315	0.15	+0.6
2,406,082	+		CSW01_11315	0.15	-0.4
2,406,082	-		CSW01_11315	0.15	+0.2
2,406,084	+		CSW01_11315	0.15	+0.2
2,406,090	-		CSW01_11315	0.16	-0.1
2,406,114	+		CSW01_11315	0.18	-0.1
2,406,122	-		CSW01_11315	0.19	-0.7
2,406,122	-		CSW01_11315	0.19	+0.4
2,406,227	+		CSW01_11315	0.31	-1.5
2,406,238	+		CSW01_11315	0.32	+0.7
2,406,245	-		CSW01_11315	0.33	-0.7
2,406,258	-		CSW01_11315	0.34	-2.2
2,406,272	+		CSW01_11315	0.36	+0.6
2,406,280	-		CSW01_11315	0.37	-0.1
2,406,335	+		CSW01_11315	0.43	+0.4
2,406,335	+		CSW01_11315	0.43	+1.6
2,406,343	-		CSW01_11315	0.44	-0.5
2,406,343	-		CSW01_11315	0.44	+0.8
2,406,421	-		CSW01_11315	0.53	+0.2
2,406,440	-		CSW01_11315	0.55	+0.4
2,406,444	-		CSW01_11315	0.55	+0.1
2,406,452	-		CSW01_11315	0.56	+1.2
2,406,481	+		CSW01_11315	0.59	-0.5
2,406,489	-		CSW01_11315	0.60	-0.2