Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10205

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_10200 and CSW01_10205 are separated by 63 nucleotidesCSW01_10205 and CSW01_10210 are separated by 164 nucleotidesCSW01_10210 and CSW01_10215 are separated by 62 nucleotides CSW01_10200: CSW01_10200 - DUF3413 domain-containing protein, at 2,196,143 to 2,197,945 _10200 CSW01_10205: CSW01_10205 - tRNA-Pro, at 2,198,009 to 2,198,085 _10205 CSW01_10210: CSW01_10210 - tRNA-Ser, at 2,198,250 to 2,198,340 _10210 CSW01_10215: CSW01_10215 - histone deacetylase, at 2,198,403 to 2,199,323 _10215 Position (kb) 2198 2199Strain fitness (log2 ratio) -1 0 1at 2197.095 kb on + strand, within CSW01_10200at 2197.118 kb on - strand, within CSW01_10200at 2197.210 kb on + strand, within CSW01_10200at 2197.255 kb on + strand, within CSW01_10200at 2197.277 kb on + strand, within CSW01_10200at 2197.277 kb on + strand, within CSW01_10200at 2197.285 kb on - strand, within CSW01_10200at 2197.287 kb on + strand, within CSW01_10200at 2197.295 kb on - strand, within CSW01_10200at 2197.364 kb on + strand, within CSW01_10200at 2197.366 kb on + strand, within CSW01_10200at 2197.376 kb on + strand, within CSW01_10200at 2197.376 kb on + strand, within CSW01_10200at 2197.376 kb on + strand, within CSW01_10200at 2197.376 kb on + strand, within CSW01_10200at 2197.376 kb on + strand, within CSW01_10200at 2197.376 kb on + strand, within CSW01_10200at 2197.376 kb on + strand, within CSW01_10200at 2197.376 kb on + strand, within CSW01_10200at 2197.384 kb on - strand, within CSW01_10200at 2197.384 kb on - strand, within CSW01_10200at 2197.384 kb on - strand, within CSW01_10200at 2197.384 kb on - strand, within CSW01_10200at 2197.409 kb on + strand, within CSW01_10200at 2197.410 kb on + strand, within CSW01_10200at 2197.494 kb on - strand, within CSW01_10200at 2197.509 kb on + strand, within CSW01_10200at 2197.509 kb on + strand, within CSW01_10200at 2197.594 kb on - strand, within CSW01_10200at 2197.640 kb on - strand, within CSW01_10200at 2197.964 kb on + strandat 2197.964 kb on + strandat 2198.013 kb on + strandat 2198.460 kb on + strandat 2198.468 kb on - strandat 2198.509 kb on + strand, within CSW01_10215at 2198.517 kb on - strand, within CSW01_10215at 2198.529 kb on - strand, within CSW01_10215at 2198.638 kb on - strand, within CSW01_10215at 2198.713 kb on - strand, within CSW01_10215at 2198.745 kb on - strand, within CSW01_10215at 2198.847 kb on + strand, within CSW01_10215at 2198.863 kb on + strand, within CSW01_10215at 2198.901 kb on - strand, within CSW01_10215

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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2,197,095 + CSW01_10200 0.53 -0.9
2,197,118 - CSW01_10200 0.54 -0.3
2,197,210 + CSW01_10200 0.59 +1.4
2,197,255 + CSW01_10200 0.62 -0.4
2,197,277 + CSW01_10200 0.63 +0.4
2,197,277 + CSW01_10200 0.63 +0.3
2,197,285 - CSW01_10200 0.63 -0.1
2,197,287 + CSW01_10200 0.63 +0.6
2,197,295 - CSW01_10200 0.64 +0.6
2,197,364 + CSW01_10200 0.68 +1.2
2,197,366 + CSW01_10200 0.68 -0.2
2,197,376 + CSW01_10200 0.68 -0.4
2,197,376 + CSW01_10200 0.68 +0.7
2,197,376 + CSW01_10200 0.68 +0.7
2,197,376 + CSW01_10200 0.68 +0.7
2,197,376 + CSW01_10200 0.68 -0.2
2,197,376 + CSW01_10200 0.68 +1.0
2,197,376 + CSW01_10200 0.68 +0.2
2,197,376 + CSW01_10200 0.68 +0.6
2,197,384 - CSW01_10200 0.69 -0.0
2,197,384 - CSW01_10200 0.69 -1.1
2,197,384 - CSW01_10200 0.69 -0.4
2,197,384 - CSW01_10200 0.69 +0.2
2,197,409 + CSW01_10200 0.70 +0.9
2,197,410 + CSW01_10200 0.70 -0.8
2,197,494 - CSW01_10200 0.75 +0.2
2,197,509 + CSW01_10200 0.76 +0.6
2,197,509 + CSW01_10200 0.76 +0.9
2,197,594 - CSW01_10200 0.80 -0.0
2,197,640 - CSW01_10200 0.83 +0.7
2,197,964 + +1.0
2,197,964 + -1.0
2,198,013 + +0.0
2,198,460 + +0.9
2,198,468 - -0.0
2,198,509 + CSW01_10215 0.12 -0.0
2,198,517 - CSW01_10215 0.12 +0.4
2,198,529 - CSW01_10215 0.14 -0.1
2,198,638 - CSW01_10215 0.26 +0.5
2,198,713 - CSW01_10215 0.34 -1.0
2,198,745 - CSW01_10215 0.37 -0.4
2,198,847 + CSW01_10215 0.48 -0.8
2,198,863 + CSW01_10215 0.50 -0.3
2,198,901 - CSW01_10215 0.54 +0.2

Or see this region's nucleotide sequence