Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_10095

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_10085 and CSW01_10090 are separated by 88 nucleotidesCSW01_10090 and CSW01_10095 are separated by 235 nucleotidesCSW01_10095 and CSW01_10100 are separated by 27 nucleotides CSW01_10085: CSW01_10085 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 2,171,540 to 2,172,784 _10085 CSW01_10090: CSW01_10090 - acyl carrier protein, at 2,172,873 to 2,173,109 _10090 CSW01_10095: CSW01_10095 - beta-ketoacyl-ACP reductase, at 2,173,345 to 2,174,079 _10095 CSW01_10100: CSW01_10100 - [acyl-carrier-protein] S-malonyltransferase, at 2,174,107 to 2,175,045 _10100 Position (kb) 2173 2174 2175Strain fitness (log2 ratio) -1 0 1at 2172.398 kb on - strand, within CSW01_10085at 2172.445 kb on + strand, within CSW01_10085at 2172.453 kb on - strand, within CSW01_10085at 2172.453 kb on - strand, within CSW01_10085at 2172.453 kb on - strand, within CSW01_10085at 2172.734 kb on - strandat 2172.743 kb on + strandat 2172.743 kb on + strandat 2172.743 kb on + strandat 2172.766 kb on - strandat 2172.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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2,172,398 - CSW01_10085 0.69 -0.4
2,172,445 + CSW01_10085 0.73 +0.3
2,172,453 - CSW01_10085 0.73 +0.1
2,172,453 - CSW01_10085 0.73 -0.6
2,172,453 - CSW01_10085 0.73 +0.2
2,172,734 - +0.7
2,172,743 + +0.3
2,172,743 + +0.8
2,172,743 + +0.1
2,172,766 - +1.7
2,172,792 - +0.8

Or see this region's nucleotide sequence