Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09750

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
2,098,114	+		CSW01_09745	0.50	-0.3
2,098,114	+		CSW01_09745	0.50	+1.0
2,098,114	+		CSW01_09745	0.50	+0.0
2,098,114	+		CSW01_09745	0.50	+0.2
2,098,114	+		CSW01_09745	0.50	+0.2
2,098,114	+		CSW01_09745	0.50	-0.7
2,098,114	+		CSW01_09745	0.50	-0.0
2,098,122	-		CSW01_09745	0.51	+2.6
2,098,122	-		CSW01_09745	0.51	-0.0
2,098,122	-		CSW01_09745	0.51	+0.2
2,098,122	-		CSW01_09745	0.51	+0.2
2,098,151	+		CSW01_09745	0.52	+0.0
2,098,158	+		CSW01_09745	0.53	+0.2
2,098,158	+		CSW01_09745	0.53	+0.3
2,098,158	+		CSW01_09745	0.53	-0.3
2,098,158	+		CSW01_09745	0.53	-0.3
2,098,158	+		CSW01_09745	0.53	+2.2
2,098,158	+		CSW01_09745	0.53	+0.4
2,098,158	+		CSW01_09745	0.53	+0.3
2,098,158	+		CSW01_09745	0.53	-0.4
2,098,166	-		CSW01_09745	0.53	+0.6
2,098,166	-		CSW01_09745	0.53	+0.2
2,098,166	-		CSW01_09745	0.53	+1.4
2,098,166	-		CSW01_09745	0.53	+0.7
2,098,166	-		CSW01_09745	0.53	+0.8
2,098,184	+		CSW01_09745	0.54	+1.0
2,098,192	-		CSW01_09745	0.54	+0.3
2,098,284	-		CSW01_09745	0.59	-0.8
2,098,308	+		CSW01_09745	0.61	+0.3
2,098,360	+		CSW01_09745	0.64	-0.4
2,098,367	+		CSW01_09745	0.64	+0.2
2,098,380	+		CSW01_09745	0.65	-1.3
2,098,394	+		CSW01_09745	0.66	+0.2
2,098,511	+		CSW01_09745	0.72	+1.0
2,098,513	-		CSW01_09745	0.72	+0.1
2,098,513	-		CSW01_09745	0.72	-0.0
2,098,623	-		CSW01_09745	0.78	-0.0
2,098,675	+		CSW01_09745	0.81	+1.0
2,098,717	-		CSW01_09745	0.83	+0.3
2,098,815	-		CSW01_09745	0.89	-1.4
2,098,829	-		CSW01_09745	0.89	-1.5
2,098,851	+				-0.6
2,098,912	-				-0.2
2,098,935	+				-1.2
2,098,943	-				-0.3
2,098,943	-				-0.2
2,099,003	+				+0.4
2,099,029	+				-0.2
2,099,032	-				+0.7
2,099,181	+				+0.5
2,099,181	+				+0.6
2,099,211	-				+0.8
2,099,236	+				-0.8
2,099,237	-				+0.1
2,099,244	-				+1.5
2,099,353	+				-0.6
2,099,358	+		CSW01_09750	0.10	+0.3
2,099,373	+		CSW01_09750	0.11	+1.8
2,099,373	+		CSW01_09750	0.11	-0.4
2,099,373	+		CSW01_09750	0.11	+0.2
2,099,381	-		CSW01_09750	0.11	+0.2
2,099,381	-		CSW01_09750	0.11	+0.4
2,099,509	-		CSW01_09750	0.16	-0.0
2,099,759	+		CSW01_09750	0.26	+0.3
2,099,759	+		CSW01_09750	0.26	+1.4
2,099,809	+		CSW01_09750	0.28	+0.5
2,099,827	-		CSW01_09750	0.29	+0.2
2,099,827	-		CSW01_09750	0.29	+1.6
2,099,839	-		CSW01_09750	0.30	+0.2
2,099,888	-		CSW01_09750	0.32	+0.0
2,099,916	+		CSW01_09750	0.33	-0.4
2,099,916	+		CSW01_09750	0.33	-1.7
2,099,924	-		CSW01_09750	0.33	-1.6
2,099,982	-		CSW01_09750	0.35	+0.5
2,099,982	-		CSW01_09750	0.35	-0.5
2,099,982	-		CSW01_09750	0.35	+0.6
2,100,006	+		CSW01_09750	0.36	-0.1
2,100,029	-		CSW01_09750	0.37	+1.1
2,100,068	+		CSW01_09750	0.39	-0.1
2,100,068	+		CSW01_09750	0.39	-0.2
2,100,068	+		CSW01_09750	0.39	-1.4
2,100,068	+		CSW01_09750	0.39	+0.3
2,100,076	-		CSW01_09750	0.39	-0.4
2,100,076	-		CSW01_09750	0.39	+0.5
2,100,096	+		CSW01_09750	0.40	-1.2
2,100,101	+		CSW01_09750	0.40	+0.9
2,100,104	-		CSW01_09750	0.40	+2.2
2,100,121	-		CSW01_09750	0.41	+0.4
2,100,131	-		CSW01_09750	0.42	-0.8
2,100,200	-		CSW01_09750	0.44	+0.2
2,100,303	-		CSW01_09750	0.49	-0.1
2,100,365	+		CSW01_09750	0.51	+0.6
2,100,446	-		CSW01_09750	0.54	+1.0
2,100,453	-		CSW01_09750	0.55	+1.0
2,100,468	+		CSW01_09750	0.55	-0.3
2,100,476	-		CSW01_09750	0.56	-1.2
2,100,489	+		CSW01_09750	0.56	+0.8
2,100,489	+		CSW01_09750	0.56	+0.2
2,100,497	-		CSW01_09750	0.57	+0.0
2,100,497	-		CSW01_09750	0.57	-0.1
2,100,614	+		CSW01_09750	0.61	+0.5
2,100,674	+		CSW01_09750	0.64	-0.6
2,100,682	-		CSW01_09750	0.64	+1.7
2,100,771	-		CSW01_09750	0.68	+0.6
2,100,807	-		CSW01_09750	0.69	+1.2
2,100,812	-		CSW01_09750	0.69	-0.3
2,100,866	-		CSW01_09750	0.72	+0.0
2,100,901	+		CSW01_09750	0.73	+0.5
2,100,906	+		CSW01_09750	0.73	+1.9
2,100,906	+		CSW01_09750	0.73	+0.9
2,100,906	+		CSW01_09750	0.73	-1.5
2,100,914	-		CSW01_09750	0.74	+0.1
2,100,932	+		CSW01_09750	0.74	-0.7
2,100,940	-		CSW01_09750	0.75	-0.4
2,100,945	-		CSW01_09750	0.75	+0.6
2,101,002	+		CSW01_09750	0.77	+1.7
2,101,044	+		CSW01_09750	0.79	-0.2
2,101,047	-		CSW01_09750	0.79	-0.1
2,101,075	-		CSW01_09750	0.80	+0.3
2,101,107	+		CSW01_09750	0.81	-0.3
2,101,107	+		CSW01_09750	0.81	+1.3
2,101,132	-		CSW01_09750	0.82	+2.0
2,101,255	-		CSW01_09750	0.88	+0.5
2,101,306	+		CSW01_09750	0.90	+0.8
2,101,313	+		CSW01_09750	0.90	+0.4
2,101,321	-				+0.4
2,101,321	-				-0.6
2,101,358	+				+0.3
2,101,358	+				+0.2
2,101,421	-				+0.1
2,101,453	-				-0.2
2,101,515	+				+0.4
2,101,521	-				+0.2
2,101,562	+				-0.1
2,101,592	+				-1.8
2,101,601	-				+0.8
2,101,743	+		CSW01_09755	0.14	+0.3
2,101,752	+		CSW01_09755	0.15	+0.9
2,101,752	+		CSW01_09755	0.15	-0.2
2,101,783	+		CSW01_09755	0.18	+0.4
2,101,791	-		CSW01_09755	0.19	-0.2
2,101,807	+		CSW01_09755	0.20	+0.3
2,101,860	+		CSW01_09755	0.25	-0.5
2,101,868	+		CSW01_09755	0.26	-0.2
2,101,876	-		CSW01_09755	0.26	+0.5
2,101,935	+		CSW01_09755	0.32	-0.7
2,101,935	+		CSW01_09755	0.32	+2.4
2,101,935	+		CSW01_09755	0.32	-0.6
2,101,935	+		CSW01_09755	0.32	-0.7
2,101,935	-		CSW01_09755	0.32	+1.4
2,101,937	+		CSW01_09755	0.32	-0.2
2,101,943	-		CSW01_09755	0.33	-0.2
2,101,943	-		CSW01_09755	0.33	-0.2
2,101,943	-		CSW01_09755	0.33	+0.2
2,101,974	+		CSW01_09755	0.35	-1.1
2,101,974	+		CSW01_09755	0.35	-0.0
2,101,987	-		CSW01_09755	0.36	-0.1
2,101,987	-		CSW01_09755	0.36	-0.1
2,101,993	+		CSW01_09755	0.37	-0.1
2,102,008	-		CSW01_09755	0.38	-0.7
2,102,010	-		CSW01_09755	0.39	+1.7
2,102,010	-		CSW01_09755	0.39	-1.9
2,102,010	-		CSW01_09755	0.39	-0.0
2,102,018	+		CSW01_09755	0.39	-0.0
2,102,040	+		CSW01_09755	0.41	+0.3
2,102,160	+		CSW01_09755	0.52	+0.1
2,102,176	-		CSW01_09755	0.54	-0.9
2,102,186	-		CSW01_09755	0.54	+0.1
2,102,188	+		CSW01_09755	0.55	-0.3
2,102,355	+		CSW01_09755	0.70	+0.2
2,102,355	+		CSW01_09755	0.70	-0.3
2,102,363	-		CSW01_09755	0.70	+0.1
2,102,363	-		CSW01_09755	0.70	-0.2
2,102,378	+		CSW01_09755	0.72	+0.0
2,102,378	+		CSW01_09755	0.72	+0.5
2,102,453	+		CSW01_09755	0.79	-0.8
2,102,525	-		CSW01_09755	0.85	-0.0
2,102,527	+		CSW01_09755	0.85	+1.4