Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07595

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07585 and CSW01_07590 are separated by 0 nucleotidesCSW01_07590 and CSW01_07595 are separated by 11 nucleotidesCSW01_07595 and CSW01_07600 are separated by 11 nucleotidesCSW01_07600 and CSW01_07605 are separated by 77 nucleotidesCSW01_07605 and CSW01_07610 are separated by 25 nucleotides CSW01_07585: CSW01_07585 - formate dehydrogenase subunit gamma, at 1,622,031 to 1,623,104 _07585 CSW01_07590: CSW01_07590 - formate dehydrogenase iron-sulfur subunit, at 1,623,105 to 1,623,713 _07590 CSW01_07595: CSW01_07595 - formate dehydrogenase, at 1,623,725 to 1,626,580 _07595 CSW01_07600: CSW01_07600 - transcriptional initiation protein Tat, at 1,626,592 to 1,626,789 _07600 CSW01_07605: CSW01_07605 - molecular chaperone, at 1,626,867 to 1,627,523 _07605 CSW01_07610: CSW01_07610 - (Fe-S)-binding protein, at 1,627,549 to 1,629,210 _07610 Position (kb) 1623 1624 1625 1626 1627Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1622.894 kb on + strand, within CSW01_07585at 1622.894 kb on + strand, within CSW01_07585at 1622.900 kb on - strand, within CSW01_07585at 1622.902 kb on - strand, within CSW01_07585at 1622.911 kb on - strand, within CSW01_07585at 1622.916 kb on + strand, within CSW01_07585at 1622.924 kb on - strand, within CSW01_07585at 1622.941 kb on - strand, within CSW01_07585at 1623.031 kb on + strandat 1623.044 kb on - strandat 1623.052 kb on + strandat 1623.070 kb on - strandat 1623.176 kb on - strand, within CSW01_07590at 1623.176 kb on - strand, within CSW01_07590at 1623.325 kb on + strand, within CSW01_07590at 1623.382 kb on - strand, within CSW01_07590at 1623.467 kb on + strand, within CSW01_07590at 1623.467 kb on + strand, within CSW01_07590at 1623.475 kb on - strand, within CSW01_07590at 1623.475 kb on - strand, within CSW01_07590at 1623.488 kb on + strand, within CSW01_07590at 1623.488 kb on + strand, within CSW01_07590at 1623.488 kb on + strand, within CSW01_07590at 1623.496 kb on - strand, within CSW01_07590at 1623.500 kb on + strand, within CSW01_07590at 1623.508 kb on - strand, within CSW01_07590at 1623.508 kb on - strand, within CSW01_07590at 1623.532 kb on + strand, within CSW01_07590at 1623.532 kb on - strand, within CSW01_07590at 1623.535 kb on - strand, within CSW01_07590at 1623.537 kb on - strand, within CSW01_07590at 1623.621 kb on - strand, within CSW01_07590at 1623.621 kb on - strand, within CSW01_07590at 1623.658 kb on - strandat 1623.685 kb on + strandat 1623.825 kb on + strandat 1623.825 kb on + strandat 1623.862 kb on + strandat 1623.964 kb on - strandat 1624.017 kb on + strand, within CSW01_07595at 1624.070 kb on - strand, within CSW01_07595at 1624.076 kb on - strand, within CSW01_07595at 1624.146 kb on + strand, within CSW01_07595at 1624.167 kb on + strand, within CSW01_07595at 1624.248 kb on + strand, within CSW01_07595at 1624.248 kb on + strand, within CSW01_07595at 1624.253 kb on - strand, within CSW01_07595at 1624.256 kb on - strand, within CSW01_07595at 1624.258 kb on - strand, within CSW01_07595at 1624.266 kb on - strand, within CSW01_07595at 1624.280 kb on + strand, within CSW01_07595at 1624.280 kb on + strand, within CSW01_07595at 1624.327 kb on + strand, within CSW01_07595at 1624.486 kb on + strand, within CSW01_07595at 1624.665 kb on + strand, within CSW01_07595at 1624.699 kb on + strand, within CSW01_07595at 1624.852 kb on - strand, within CSW01_07595at 1624.873 kb on + strand, within CSW01_07595at 1624.946 kb on + strand, within CSW01_07595at 1624.959 kb on - strand, within CSW01_07595at 1624.986 kb on + strand, within CSW01_07595at 1625.018 kb on + strand, within CSW01_07595at 1625.179 kb on + strand, within CSW01_07595at 1625.187 kb on - strand, within CSW01_07595at 1625.187 kb on - strand, within CSW01_07595at 1625.297 kb on + strand, within CSW01_07595at 1625.311 kb on + strand, within CSW01_07595at 1625.320 kb on - strand, within CSW01_07595at 1625.408 kb on - strand, within CSW01_07595at 1625.462 kb on - strand, within CSW01_07595at 1625.501 kb on - strand, within CSW01_07595at 1625.515 kb on + strand, within CSW01_07595at 1625.515 kb on + strand, within CSW01_07595at 1625.516 kb on - strand, within CSW01_07595at 1625.521 kb on - strand, within CSW01_07595at 1625.523 kb on - strand, within CSW01_07595at 1625.523 kb on - strand, within CSW01_07595at 1625.528 kb on - strand, within CSW01_07595at 1625.579 kb on + strand, within CSW01_07595at 1625.579 kb on + strand, within CSW01_07595at 1625.587 kb on - strand, within CSW01_07595at 1625.587 kb on - strand, within CSW01_07595at 1625.587 kb on - strand, within CSW01_07595at 1625.587 kb on - strand, within CSW01_07595at 1625.587 kb on - strand, within CSW01_07595at 1625.587 kb on - strand, within CSW01_07595at 1625.587 kb on - strand, within CSW01_07595at 1625.587 kb on - strand, within CSW01_07595at 1625.662 kb on - strand, within CSW01_07595at 1625.692 kb on - strand, within CSW01_07595at 1625.746 kb on - strand, within CSW01_07595at 1625.773 kb on - strand, within CSW01_07595at 1625.894 kb on + strand, within CSW01_07595at 1625.966 kb on - strand, within CSW01_07595at 1625.978 kb on - strand, within CSW01_07595at 1626.071 kb on - strand, within CSW01_07595at 1626.073 kb on + strand, within CSW01_07595at 1626.078 kb on + strand, within CSW01_07595at 1626.083 kb on + strand, within CSW01_07595at 1626.085 kb on + strand, within CSW01_07595at 1626.085 kb on + strand, within CSW01_07595at 1626.085 kb on + strand, within CSW01_07595at 1626.085 kb on + strand, within CSW01_07595at 1626.085 kb on + strand, within CSW01_07595at 1626.093 kb on - strand, within CSW01_07595at 1626.093 kb on - strand, within CSW01_07595at 1626.285 kb on + strand, within CSW01_07595at 1626.366 kb on + strandat 1626.410 kb on + strandat 1626.418 kb on - strandat 1626.420 kb on + strandat 1626.425 kb on + strandat 1626.520 kb on + strandat 1626.520 kb on + strandat 1626.528 kb on - strandat 1626.528 kb on - strandat 1626.535 kb on + strandat 1626.565 kb on - strandat 1626.565 kb on - strandat 1626.627 kb on - strand, within CSW01_07600at 1626.733 kb on + strand, within CSW01_07600at 1626.741 kb on - strand, within CSW01_07600at 1626.741 kb on - strand, within CSW01_07600at 1626.773 kb on - strandat 1626.821 kb on + strandat 1627.023 kb on - strand, within CSW01_07605at 1627.104 kb on - strand, within CSW01_07605at 1627.155 kb on - strand, within CSW01_07605at 1627.183 kb on + strand, within CSW01_07605at 1627.254 kb on - strand, within CSW01_07605at 1627.433 kb on + strand, within CSW01_07605at 1627.433 kb on + strand, within CSW01_07605at 1627.433 kb on + strand, within CSW01_07605at 1627.465 kb on - strandat 1627.482 kb on - strandat 1627.574 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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1,622,894 + CSW01_07585 0.80 +0.8
1,622,894 + CSW01_07585 0.80 -0.2
1,622,900 - CSW01_07585 0.81 -0.1
1,622,902 - CSW01_07585 0.81 -0.1
1,622,911 - CSW01_07585 0.82 -0.4
1,622,916 + CSW01_07585 0.82 +0.4
1,622,924 - CSW01_07585 0.83 +0.0
1,622,941 - CSW01_07585 0.85 -0.3
1,623,031 + +0.7
1,623,044 - +0.0
1,623,052 + +3.0
1,623,070 - +0.1
1,623,176 - CSW01_07590 0.12 +0.6
1,623,176 - CSW01_07590 0.12 +0.5
1,623,325 + CSW01_07590 0.36 -0.1
1,623,382 - CSW01_07590 0.45 +1.6
1,623,467 + CSW01_07590 0.59 +0.6
1,623,467 + CSW01_07590 0.59 -0.5
1,623,475 - CSW01_07590 0.61 -0.3
1,623,475 - CSW01_07590 0.61 +0.4
1,623,488 + CSW01_07590 0.63 -0.1
1,623,488 + CSW01_07590 0.63 -1.0
1,623,488 + CSW01_07590 0.63 +0.1
1,623,496 - CSW01_07590 0.64 -0.3
1,623,500 + CSW01_07590 0.65 -3.0
1,623,508 - CSW01_07590 0.66 -0.5
1,623,508 - CSW01_07590 0.66 -2.3
1,623,532 + CSW01_07590 0.70 +2.0
1,623,532 - CSW01_07590 0.70 +1.0
1,623,535 - CSW01_07590 0.71 -0.4
1,623,537 - CSW01_07590 0.71 -0.5
1,623,621 - CSW01_07590 0.85 -0.7
1,623,621 - CSW01_07590 0.85 +0.1
1,623,658 - -0.5
1,623,685 + -3.0
1,623,825 + -0.1
1,623,825 + +0.9
1,623,862 + -1.4
1,623,964 - -1.4
1,624,017 + CSW01_07595 0.10 -0.1
1,624,070 - CSW01_07595 0.12 +0.2
1,624,076 - CSW01_07595 0.12 -0.9
1,624,146 + CSW01_07595 0.15 -0.2
1,624,167 + CSW01_07595 0.15 +0.0
1,624,248 + CSW01_07595 0.18 -0.1
1,624,248 + CSW01_07595 0.18 -0.1
1,624,253 - CSW01_07595 0.18 +0.4
1,624,256 - CSW01_07595 0.19 -0.3
1,624,258 - CSW01_07595 0.19 +0.5
1,624,266 - CSW01_07595 0.19 +0.0
1,624,280 + CSW01_07595 0.19 +0.8
1,624,280 + CSW01_07595 0.19 +0.9
1,624,327 + CSW01_07595 0.21 -0.5
1,624,486 + CSW01_07595 0.27 -0.1
1,624,665 + CSW01_07595 0.33 +0.1
1,624,699 + CSW01_07595 0.34 -0.1
1,624,852 - CSW01_07595 0.39 -0.3
1,624,873 + CSW01_07595 0.40 -1.1
1,624,946 + CSW01_07595 0.43 -0.3
1,624,959 - CSW01_07595 0.43 +0.0
1,624,986 + CSW01_07595 0.44 -0.3
1,625,018 + CSW01_07595 0.45 -0.3
1,625,179 + CSW01_07595 0.51 -2.3
1,625,187 - CSW01_07595 0.51 +0.4
1,625,187 - CSW01_07595 0.51 +0.6
1,625,297 + CSW01_07595 0.55 -0.4
1,625,311 + CSW01_07595 0.56 +1.0
1,625,320 - CSW01_07595 0.56 +1.0
1,625,408 - CSW01_07595 0.59 -1.0
1,625,462 - CSW01_07595 0.61 -0.0
1,625,501 - CSW01_07595 0.62 -0.4
1,625,515 + CSW01_07595 0.63 -0.2
1,625,515 + CSW01_07595 0.63 -1.3
1,625,516 - CSW01_07595 0.63 +0.3
1,625,521 - CSW01_07595 0.63 -0.6
1,625,523 - CSW01_07595 0.63 +2.0
1,625,523 - CSW01_07595 0.63 +0.4
1,625,528 - CSW01_07595 0.63 -0.2
1,625,579 + CSW01_07595 0.65 +0.0
1,625,579 + CSW01_07595 0.65 +0.1
1,625,587 - CSW01_07595 0.65 -0.8
1,625,587 - CSW01_07595 0.65 +1.2
1,625,587 - CSW01_07595 0.65 -0.5
1,625,587 - CSW01_07595 0.65 -2.3
1,625,587 - CSW01_07595 0.65 +0.3
1,625,587 - CSW01_07595 0.65 +0.2
1,625,587 - CSW01_07595 0.65 +0.5
1,625,587 - CSW01_07595 0.65 +0.0
1,625,662 - CSW01_07595 0.68 -0.6
1,625,692 - CSW01_07595 0.69 +0.1
1,625,746 - CSW01_07595 0.71 +0.3
1,625,773 - CSW01_07595 0.72 +1.9
1,625,894 + CSW01_07595 0.76 +1.3
1,625,966 - CSW01_07595 0.78 -0.6
1,625,978 - CSW01_07595 0.79 -1.4
1,626,071 - CSW01_07595 0.82 -0.1
1,626,073 + CSW01_07595 0.82 -0.1
1,626,078 + CSW01_07595 0.82 +0.0
1,626,083 + CSW01_07595 0.83 +0.3
1,626,085 + CSW01_07595 0.83 +0.9
1,626,085 + CSW01_07595 0.83 -0.6
1,626,085 + CSW01_07595 0.83 +0.2
1,626,085 + CSW01_07595 0.83 -0.4
1,626,085 + CSW01_07595 0.83 -0.2
1,626,093 - CSW01_07595 0.83 -0.7
1,626,093 - CSW01_07595 0.83 +0.6
1,626,285 + CSW01_07595 0.90 -0.3
1,626,366 + -0.3
1,626,410 + +0.6
1,626,418 - -0.6
1,626,420 + +0.2
1,626,425 + +0.2
1,626,520 + -0.3
1,626,520 + +1.0
1,626,528 - +0.4
1,626,528 - +0.8
1,626,535 + +0.4
1,626,565 - -0.7
1,626,565 - -1.0
1,626,627 - CSW01_07600 0.18 +1.0
1,626,733 + CSW01_07600 0.71 -0.3
1,626,741 - CSW01_07600 0.75 +0.0
1,626,741 - CSW01_07600 0.75 +0.2
1,626,773 - -0.6
1,626,821 + +1.6
1,627,023 - CSW01_07605 0.24 -0.6
1,627,104 - CSW01_07605 0.36 -1.0
1,627,155 - CSW01_07605 0.44 +1.0
1,627,183 + CSW01_07605 0.48 +0.0
1,627,254 - CSW01_07605 0.59 -0.2
1,627,433 + CSW01_07605 0.86 +0.8
1,627,433 + CSW01_07605 0.86 -0.0
1,627,433 + CSW01_07605 0.86 +0.8
1,627,465 - -0.1
1,627,482 - -0.8
1,627,574 - +0.3

Or see this region's nucleotide sequence