Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05920

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05910 and CSW01_05915 are separated by 96 nucleotidesCSW01_05915 and CSW01_05920 are separated by 101 nucleotidesCSW01_05920 and CSW01_05925 are separated by 315 nucleotides CSW01_05910: CSW01_05910 - aspartate--tRNA ligase, at 1,236,866 to 1,238,641 _05910 CSW01_05915: CSW01_05915 - thymidine kinase, at 1,238,738 to 1,239,316 _05915 CSW01_05920: CSW01_05920 - dicarboxylate/amino acid:cation symporter, at 1,239,418 to 1,240,674 _05920 CSW01_05925: CSW01_05925 - tryptophan synthase subunit alpha, at 1,240,990 to 1,241,796 _05925 Position (kb) 1239 1240 1241Strain fitness (log2 ratio) -2 -1 0 1 2at 1238.665 kb on - strandat 1238.723 kb on + strandat 1238.749 kb on - strandat 1238.790 kb on - strandat 1239.073 kb on + strand, within CSW01_05915at 1239.073 kb on + strand, within CSW01_05915at 1239.073 kb on + strand, within CSW01_05915at 1239.073 kb on + strand, within CSW01_05915at 1239.081 kb on - strand, within CSW01_05915at 1239.081 kb on - strand, within CSW01_05915at 1239.133 kb on - strand, within CSW01_05915at 1239.173 kb on - strand, within CSW01_05915at 1239.204 kb on + strand, within CSW01_05915at 1239.207 kb on - strand, within CSW01_05915at 1239.274 kb on - strandat 1239.503 kb on + strandat 1239.515 kb on + strandat 1239.594 kb on - strand, within CSW01_05920at 1239.594 kb on - strand, within CSW01_05920at 1239.644 kb on + strand, within CSW01_05920at 1239.703 kb on - strand, within CSW01_05920at 1239.778 kb on - strand, within CSW01_05920at 1239.792 kb on + strand, within CSW01_05920at 1239.863 kb on + strand, within CSW01_05920at 1239.863 kb on + strand, within CSW01_05920at 1239.863 kb on + strand, within CSW01_05920at 1239.871 kb on - strand, within CSW01_05920at 1239.871 kb on - strand, within CSW01_05920at 1239.871 kb on - strand, within CSW01_05920at 1239.871 kb on - strand, within CSW01_05920at 1239.881 kb on - strand, within CSW01_05920at 1239.958 kb on - strand, within CSW01_05920at 1240.010 kb on - strand, within CSW01_05920at 1240.010 kb on - strand, within CSW01_05920at 1240.138 kb on + strand, within CSW01_05920at 1240.138 kb on + strand, within CSW01_05920at 1240.286 kb on + strand, within CSW01_05920at 1240.286 kb on - strand, within CSW01_05920at 1240.311 kb on + strand, within CSW01_05920at 1240.319 kb on - strand, within CSW01_05920at 1240.360 kb on - strand, within CSW01_05920at 1240.369 kb on - strand, within CSW01_05920at 1240.434 kb on + strand, within CSW01_05920at 1240.439 kb on + strand, within CSW01_05920at 1240.468 kb on + strand, within CSW01_05920at 1240.476 kb on - strand, within CSW01_05920at 1240.678 kb on - strandat 1240.980 kb on - strandat 1241.042 kb on - strandat 1241.042 kb on - strandat 1241.201 kb on + strand, within CSW01_05925at 1241.303 kb on + strand, within CSW01_05925at 1241.428 kb on + strand, within CSW01_05925at 1241.555 kb on - strand, within CSW01_05925at 1241.657 kb on - strand, within CSW01_05925at 1241.666 kb on - strand, within CSW01_05925

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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1,238,665 - -0.6
1,238,723 + +0.1
1,238,749 - +0.0
1,238,790 - -2.2
1,239,073 + CSW01_05915 0.58 -0.8
1,239,073 + CSW01_05915 0.58 +0.8
1,239,073 + CSW01_05915 0.58 +0.1
1,239,073 + CSW01_05915 0.58 +0.2
1,239,081 - CSW01_05915 0.59 +1.4
1,239,081 - CSW01_05915 0.59 +0.5
1,239,133 - CSW01_05915 0.68 +0.6
1,239,173 - CSW01_05915 0.75 -1.6
1,239,204 + CSW01_05915 0.80 +1.6
1,239,207 - CSW01_05915 0.81 +2.3
1,239,274 - +1.4
1,239,503 + -0.1
1,239,515 + +0.1
1,239,594 - CSW01_05920 0.14 -0.0
1,239,594 - CSW01_05920 0.14 -0.2
1,239,644 + CSW01_05920 0.18 +1.3
1,239,703 - CSW01_05920 0.23 +0.8
1,239,778 - CSW01_05920 0.29 +0.0
1,239,792 + CSW01_05920 0.30 +0.6
1,239,863 + CSW01_05920 0.35 +0.2
1,239,863 + CSW01_05920 0.35 +0.3
1,239,863 + CSW01_05920 0.35 +0.2
1,239,871 - CSW01_05920 0.36 +0.2
1,239,871 - CSW01_05920 0.36 +0.9
1,239,871 - CSW01_05920 0.36 +0.1
1,239,871 - CSW01_05920 0.36 +1.9
1,239,881 - CSW01_05920 0.37 +1.5
1,239,958 - CSW01_05920 0.43 +0.7
1,240,010 - CSW01_05920 0.47 +2.4
1,240,010 - CSW01_05920 0.47 -0.3
1,240,138 + CSW01_05920 0.57 +0.6
1,240,138 + CSW01_05920 0.57 +0.4
1,240,286 + CSW01_05920 0.69 -2.2
1,240,286 - CSW01_05920 0.69 -0.8
1,240,311 + CSW01_05920 0.71 +0.0
1,240,319 - CSW01_05920 0.72 +1.1
1,240,360 - CSW01_05920 0.75 -0.1
1,240,369 - CSW01_05920 0.76 +0.6
1,240,434 + CSW01_05920 0.81 +0.5
1,240,439 + CSW01_05920 0.81 -0.1
1,240,468 + CSW01_05920 0.84 +2.3
1,240,476 - CSW01_05920 0.84 +0.1
1,240,678 - -0.7
1,240,980 - +0.6
1,241,042 - -1.4
1,241,042 - -0.9
1,241,201 + CSW01_05925 0.26 +0.6
1,241,303 + CSW01_05925 0.39 -0.3
1,241,428 + CSW01_05925 0.54 +0.7
1,241,555 - CSW01_05925 0.70 -1.0
1,241,657 - CSW01_05925 0.83 +0.6
1,241,666 - CSW01_05925 0.84 +0.5

Or see this region's nucleotide sequence