Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05780

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05770 and CSW01_05775 overlap by 19 nucleotidesCSW01_05775 and CSW01_05780 overlap by 4 nucleotidesCSW01_05780 and CSW01_05785 are separated by 200 nucleotides CSW01_05770: CSW01_05770 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 1,205,039 to 1,205,776 _05770 CSW01_05775: CSW01_05775 - imidazole glycerol phosphate synthase cyclase subunit, at 1,205,758 to 1,206,531 _05775 CSW01_05780: CSW01_05780 - bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase, at 1,206,528 to 1,207,160 _05780 CSW01_05785: CSW01_05785 - 23S rRNA pseudouridine synthase E, at 1,207,361 to 1,208,086 _05785 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -1 0 1 2at 1205.536 kb on - strand, within CSW01_05770at 1205.550 kb on + strand, within CSW01_05770at 1205.698 kb on - strand, within CSW01_05770at 1205.741 kb on + strandat 1205.850 kb on + strand, within CSW01_05775at 1205.862 kb on + strand, within CSW01_05775at 1205.876 kb on - strand, within CSW01_05775at 1205.954 kb on - strand, within CSW01_05775at 1206.025 kb on + strand, within CSW01_05775at 1206.078 kb on + strand, within CSW01_05775at 1206.128 kb on + strand, within CSW01_05775at 1206.215 kb on + strand, within CSW01_05775at 1206.253 kb on + strand, within CSW01_05775at 1206.261 kb on - strand, within CSW01_05775at 1206.323 kb on + strand, within CSW01_05775at 1206.331 kb on - strand, within CSW01_05775at 1206.331 kb on - strand, within CSW01_05775at 1206.333 kb on + strand, within CSW01_05775at 1206.333 kb on + strand, within CSW01_05775at 1206.333 kb on + strand, within CSW01_05775at 1206.333 kb on + strand, within CSW01_05775at 1206.341 kb on - strand, within CSW01_05775at 1206.354 kb on + strand, within CSW01_05775at 1206.420 kb on - strand, within CSW01_05775at 1206.447 kb on - strand, within CSW01_05775at 1206.497 kb on + strandat 1206.505 kb on - strandat 1206.527 kb on + strandat 1206.638 kb on - strand, within CSW01_05780at 1206.716 kb on - strand, within CSW01_05780at 1206.725 kb on + strand, within CSW01_05780at 1206.819 kb on + strand, within CSW01_05780at 1206.827 kb on + strand, within CSW01_05780at 1206.835 kb on - strand, within CSW01_05780at 1206.848 kb on - strand, within CSW01_05780at 1206.865 kb on + strand, within CSW01_05780at 1206.884 kb on + strand, within CSW01_05780at 1206.916 kb on - strand, within CSW01_05780at 1206.916 kb on - strand, within CSW01_05780at 1206.966 kb on - strand, within CSW01_05780at 1207.047 kb on - strand, within CSW01_05780at 1207.104 kb on + strandat 1207.104 kb on + strandat 1207.112 kb on - strandat 1207.112 kb on - strandat 1207.358 kb on + strandat 1207.366 kb on - strandat 1207.430 kb on + strandat 1207.533 kb on - strand, within CSW01_05785at 1207.574 kb on - strand, within CSW01_05785at 1207.604 kb on + strand, within CSW01_05785at 1207.615 kb on + strand, within CSW01_05785at 1207.650 kb on - strand, within CSW01_05785at 1207.650 kb on - strand, within CSW01_05785at 1207.698 kb on + strand, within CSW01_05785at 1207.698 kb on + strand, within CSW01_05785at 1207.706 kb on - strand, within CSW01_05785at 1207.890 kb on + strand, within CSW01_05785at 1207.970 kb on + strand, within CSW01_05785at 1208.054 kb on - strandat 1208.095 kb on - strandat 1208.148 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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1,205,536 - CSW01_05770 0.67 +0.6
1,205,550 + CSW01_05770 0.69 +0.5
1,205,698 - CSW01_05770 0.89 +0.3
1,205,741 + +0.3
1,205,850 + CSW01_05775 0.12 +0.0
1,205,862 + CSW01_05775 0.13 +0.7
1,205,876 - CSW01_05775 0.15 +1.9
1,205,954 - CSW01_05775 0.25 +1.6
1,206,025 + CSW01_05775 0.34 -0.1
1,206,078 + CSW01_05775 0.41 +0.4
1,206,128 + CSW01_05775 0.48 +0.5
1,206,215 + CSW01_05775 0.59 +0.0
1,206,253 + CSW01_05775 0.64 +0.7
1,206,261 - CSW01_05775 0.65 +0.8
1,206,323 + CSW01_05775 0.73 +0.1
1,206,331 - CSW01_05775 0.74 +0.5
1,206,331 - CSW01_05775 0.74 +0.8
1,206,333 + CSW01_05775 0.74 -0.2
1,206,333 + CSW01_05775 0.74 +0.0
1,206,333 + CSW01_05775 0.74 +0.1
1,206,333 + CSW01_05775 0.74 +0.3
1,206,341 - CSW01_05775 0.75 +0.4
1,206,354 + CSW01_05775 0.77 +0.2
1,206,420 - CSW01_05775 0.86 -0.7
1,206,447 - CSW01_05775 0.89 -0.5
1,206,497 + +0.6
1,206,505 - -0.4
1,206,527 + +0.9
1,206,638 - CSW01_05780 0.17 +0.3
1,206,716 - CSW01_05780 0.30 +0.2
1,206,725 + CSW01_05780 0.31 -0.9
1,206,819 + CSW01_05780 0.46 -0.0
1,206,827 + CSW01_05780 0.47 -0.9
1,206,835 - CSW01_05780 0.48 -0.2
1,206,848 - CSW01_05780 0.51 +0.9
1,206,865 + CSW01_05780 0.53 -0.3
1,206,884 + CSW01_05780 0.56 +0.5
1,206,916 - CSW01_05780 0.61 -0.2
1,206,916 - CSW01_05780 0.61 +0.3
1,206,966 - CSW01_05780 0.69 -1.3
1,207,047 - CSW01_05780 0.82 -0.1
1,207,104 + -0.1
1,207,104 + +0.3
1,207,112 - +0.8
1,207,112 - +0.9
1,207,358 + +0.7
1,207,366 - +0.5
1,207,430 + -0.9
1,207,533 - CSW01_05785 0.24 +0.9
1,207,574 - CSW01_05785 0.29 -0.5
1,207,604 + CSW01_05785 0.33 +0.6
1,207,615 + CSW01_05785 0.35 +0.3
1,207,650 - CSW01_05785 0.40 +0.7
1,207,650 - CSW01_05785 0.40 +1.1
1,207,698 + CSW01_05785 0.46 -1.1
1,207,698 + CSW01_05785 0.46 +0.8
1,207,706 - CSW01_05785 0.48 +0.2
1,207,890 + CSW01_05785 0.73 +0.5
1,207,970 + CSW01_05785 0.84 +0.1
1,208,054 - +0.1
1,208,095 - -1.3
1,208,148 - +0.1

Or see this region's nucleotide sequence