Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_05580 and CSW01_05585 are separated by 352 nucleotides CSW01_05585 and CSW01_05590 are separated by 122 nucleotides CSW01_05590 and CSW01_05595 are separated by 437 nucleotides
CSW01_05580: CSW01_05580 - acetate kinase, at 1,166,489 to 1,167,685
_05580
CSW01_05585: CSW01_05585 - DUF412 domain-containing protein, at 1,168,038 to 1,168,490
_05585
CSW01_05590: CSW01_05590 - DNA-binding protein VF530, at 1,168,613 to 1,169,023
_05590
CSW01_05595: CSW01_05595 - ABC transporter substrate-binding protein, at 1,169,461 to 1,170,426
_05595
Position (kb)
1168
1169 Strain fitness (log2 ratio)
-2
-1
0
1 at 1167.047 kb on + strand, within CSW01_05580 at 1167.099 kb on + strand, within CSW01_05580 at 1167.204 kb on + strand, within CSW01_05580 at 1167.204 kb on + strand, within CSW01_05580 at 1167.212 kb on - strand, within CSW01_05580 at 1167.248 kb on + strand, within CSW01_05580 at 1167.248 kb on + strand, within CSW01_05580 at 1167.254 kb on - strand, within CSW01_05580 at 1167.256 kb on - strand, within CSW01_05580 at 1167.311 kb on - strand, within CSW01_05580 at 1167.326 kb on - strand, within CSW01_05580 at 1167.326 kb on - strand, within CSW01_05580 at 1167.328 kb on - strand, within CSW01_05580 at 1167.367 kb on - strand, within CSW01_05580 at 1167.400 kb on + strand, within CSW01_05580 at 1167.406 kb on - strand, within CSW01_05580 at 1167.407 kb on + strand, within CSW01_05580 at 1167.408 kb on - strand, within CSW01_05580 at 1167.408 kb on - strand, within CSW01_05580 at 1167.408 kb on - strand, within CSW01_05580 at 1167.408 kb on - strand, within CSW01_05580 at 1167.529 kb on - strand, within CSW01_05580 at 1167.571 kb on - strand at 1167.582 kb on - strand at 1167.590 kb on - strand at 1167.631 kb on + strand at 1167.771 kb on - strand at 1167.863 kb on - strand at 1167.897 kb on - strand at 1167.897 kb on - strand at 1167.897 kb on - strand at 1167.907 kb on - strand at 1168.019 kb on + strand at 1168.066 kb on + strand at 1168.074 kb on - strand at 1168.232 kb on + strand, within CSW01_05585 at 1168.232 kb on + strand, within CSW01_05585 at 1168.234 kb on - strand, within CSW01_05585 at 1168.240 kb on - strand, within CSW01_05585 at 1168.240 kb on - strand, within CSW01_05585 at 1168.240 kb on - strand, within CSW01_05585 at 1168.296 kb on - strand, within CSW01_05585 at 1168.296 kb on - strand, within CSW01_05585 at 1168.434 kb on + strand, within CSW01_05585 at 1168.460 kb on + strand at 1168.468 kb on - strand at 1168.484 kb on + strand at 1168.519 kb on + strand at 1168.523 kb on - strand at 1168.583 kb on + strand at 1168.619 kb on - strand at 1168.654 kb on + strand, within CSW01_05590 at 1168.720 kb on + strand, within CSW01_05590 at 1168.721 kb on - strand, within CSW01_05590 at 1168.872 kb on + strand, within CSW01_05590 at 1168.921 kb on - strand, within CSW01_05590 at 1169.091 kb on + strand at 1169.091 kb on + strand at 1169.144 kb on - strand at 1169.202 kb on + strand at 1169.455 kb on + strand at 1169.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B remove 1,167,047 + CSW01_05580 0.47 -1.8 1,167,099 + CSW01_05580 0.51 -1.2 1,167,204 + CSW01_05580 0.60 -1.4 1,167,204 + CSW01_05580 0.60 -1.8 1,167,212 - CSW01_05580 0.60 -2.4 1,167,248 + CSW01_05580 0.63 -2.2 1,167,248 + CSW01_05580 0.63 +0.2 1,167,254 - CSW01_05580 0.64 +0.5 1,167,256 - CSW01_05580 0.64 +0.2 1,167,311 - CSW01_05580 0.69 -1.5 1,167,326 - CSW01_05580 0.70 -0.6 1,167,326 - CSW01_05580 0.70 -1.4 1,167,328 - CSW01_05580 0.70 -2.2 1,167,367 - CSW01_05580 0.73 +0.3 1,167,400 + CSW01_05580 0.76 -2.2 1,167,406 - CSW01_05580 0.77 +1.2 1,167,407 + CSW01_05580 0.77 +1.4 1,167,408 - CSW01_05580 0.77 -1.4 1,167,408 - CSW01_05580 0.77 -0.4 1,167,408 - CSW01_05580 0.77 -1.1 1,167,408 - CSW01_05580 0.77 +0.6 1,167,529 - CSW01_05580 0.87 +1.7 1,167,571 - +0.2 1,167,582 - +0.2 1,167,590 - +0.0 1,167,631 + -1.8 1,167,771 - -0.2 1,167,863 - +0.2 1,167,897 - -0.3 1,167,897 - +0.8 1,167,897 - -0.7 1,167,907 - +0.6 1,168,019 + -0.4 1,168,066 + +0.2 1,168,074 - -0.2 1,168,232 + CSW01_05585 0.43 +0.9 1,168,232 + CSW01_05585 0.43 +0.9 1,168,234 - CSW01_05585 0.43 -0.4 1,168,240 - CSW01_05585 0.45 +0.5 1,168,240 - CSW01_05585 0.45 +0.6 1,168,240 - CSW01_05585 0.45 +0.8 1,168,296 - CSW01_05585 0.57 +0.8 1,168,296 - CSW01_05585 0.57 +0.7 1,168,434 + CSW01_05585 0.87 -0.1 1,168,460 + +1.7 1,168,468 - +0.9 1,168,484 + -2.1 1,168,519 + -0.3 1,168,523 - +1.1 1,168,583 + -0.2 1,168,619 - +0.6 1,168,654 + CSW01_05590 0.10 -0.1 1,168,720 + CSW01_05590 0.26 -0.2 1,168,721 - CSW01_05590 0.26 +0.7 1,168,872 + CSW01_05590 0.63 -0.3 1,168,921 - CSW01_05590 0.75 -0.3 1,169,091 + -0.8 1,169,091 + -0.3 1,169,144 - +0.6 1,169,202 + -0.3 1,169,455 + +0.4 1,169,461 - -0.7
Or see this region's nucleotide sequence