Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05415

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05410 and CSW01_05415 are separated by 150 nucleotidesCSW01_05415 and CSW01_05420 are separated by 53 nucleotidesCSW01_05420 and CSW01_05425 are separated by 50 nucleotides CSW01_05410: CSW01_05410 - acyl-CoA thioesterase II, at 1,129,297 to 1,130,157 _05410 CSW01_05415: CSW01_05415 - lipo-like protein, at 1,130,308 to 1,130,739 _05415 CSW01_05420: CSW01_05420 - hypothetical protein, at 1,130,793 to 1,131,095 _05420 CSW01_05425: CSW01_05425 - hypothetical protein, at 1,131,146 to 1,131,889 _05425 Position (kb) 1130 1131Strain fitness (log2 ratio) -1 0 1 2at 1129.398 kb on + strand, within CSW01_05410at 1129.398 kb on + strand, within CSW01_05410at 1129.406 kb on - strand, within CSW01_05410at 1129.475 kb on - strand, within CSW01_05410at 1129.503 kb on + strand, within CSW01_05410at 1129.511 kb on - strand, within CSW01_05410at 1129.511 kb on - strand, within CSW01_05410at 1129.518 kb on + strand, within CSW01_05410at 1129.554 kb on - strand, within CSW01_05410at 1129.559 kb on - strand, within CSW01_05410at 1129.624 kb on - strand, within CSW01_05410at 1129.655 kb on - strand, within CSW01_05410at 1129.842 kb on - strand, within CSW01_05410at 1129.886 kb on - strand, within CSW01_05410at 1129.981 kb on + strand, within CSW01_05410at 1130.023 kb on + strand, within CSW01_05410at 1130.037 kb on - strand, within CSW01_05410at 1130.037 kb on - strand, within CSW01_05410at 1130.064 kb on - strand, within CSW01_05410at 1130.101 kb on + strandat 1130.167 kb on - strandat 1130.168 kb on - strandat 1130.298 kb on - strandat 1130.348 kb on + strandat 1130.356 kb on - strand, within CSW01_05415at 1130.361 kb on - strand, within CSW01_05415at 1130.428 kb on - strand, within CSW01_05415at 1130.428 kb on - strand, within CSW01_05415at 1130.604 kb on + strand, within CSW01_05415at 1130.604 kb on + strand, within CSW01_05415at 1130.612 kb on - strand, within CSW01_05415at 1130.682 kb on - strand, within CSW01_05415at 1130.692 kb on - strand, within CSW01_05415at 1130.751 kb on + strandat 1130.841 kb on - strand, within CSW01_05420at 1130.843 kb on + strand, within CSW01_05420at 1130.843 kb on + strand, within CSW01_05420at 1130.844 kb on - strand, within CSW01_05420at 1130.844 kb on - strand, within CSW01_05420at 1130.846 kb on - strand, within CSW01_05420at 1130.851 kb on - strand, within CSW01_05420at 1130.851 kb on - strand, within CSW01_05420at 1130.851 kb on - strand, within CSW01_05420at 1131.031 kb on + strand, within CSW01_05420at 1131.039 kb on - strand, within CSW01_05420at 1131.126 kb on + strandat 1131.130 kb on + strandat 1131.138 kb on - strandat 1131.144 kb on + strandat 1131.230 kb on + strand, within CSW01_05425at 1131.393 kb on - strand, within CSW01_05425at 1131.415 kb on - strand, within CSW01_05425at 1131.504 kb on + strand, within CSW01_05425at 1131.512 kb on - strand, within CSW01_05425at 1131.602 kb on + strand, within CSW01_05425at 1131.648 kb on + strand, within CSW01_05425at 1131.648 kb on + strand, within CSW01_05425at 1131.656 kb on - strand, within CSW01_05425at 1131.656 kb on - strand, within CSW01_05425at 1131.713 kb on + strand, within CSW01_05425at 1131.713 kb on + strand, within CSW01_05425at 1131.721 kb on - strand, within CSW01_05425

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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1,129,398 + CSW01_05410 0.12 -0.3
1,129,398 + CSW01_05410 0.12 +0.4
1,129,406 - CSW01_05410 0.13 +0.4
1,129,475 - CSW01_05410 0.21 +0.6
1,129,503 + CSW01_05410 0.24 +0.9
1,129,511 - CSW01_05410 0.25 -0.3
1,129,511 - CSW01_05410 0.25 +0.0
1,129,518 + CSW01_05410 0.26 +0.4
1,129,554 - CSW01_05410 0.30 -0.9
1,129,559 - CSW01_05410 0.30 +1.0
1,129,624 - CSW01_05410 0.38 +0.1
1,129,655 - CSW01_05410 0.42 -1.0
1,129,842 - CSW01_05410 0.63 +0.4
1,129,886 - CSW01_05410 0.68 +0.3
1,129,981 + CSW01_05410 0.79 +0.4
1,130,023 + CSW01_05410 0.84 +0.8
1,130,037 - CSW01_05410 0.86 -0.7
1,130,037 - CSW01_05410 0.86 +2.0
1,130,064 - CSW01_05410 0.89 -1.7
1,130,101 + +0.0
1,130,167 - +0.7
1,130,168 - +1.6
1,130,298 - +1.3
1,130,348 + +0.2
1,130,356 - CSW01_05415 0.11 -0.1
1,130,361 - CSW01_05415 0.12 -1.2
1,130,428 - CSW01_05415 0.28 +0.4
1,130,428 - CSW01_05415 0.28 +0.3
1,130,604 + CSW01_05415 0.69 +0.9
1,130,604 + CSW01_05415 0.69 +1.8
1,130,612 - CSW01_05415 0.70 +1.2
1,130,682 - CSW01_05415 0.87 +0.4
1,130,692 - CSW01_05415 0.89 -0.3
1,130,751 + -0.3
1,130,841 - CSW01_05420 0.16 +1.0
1,130,843 + CSW01_05420 0.17 +0.9
1,130,843 + CSW01_05420 0.17 +0.8
1,130,844 - CSW01_05420 0.17 +1.6
1,130,844 - CSW01_05420 0.17 +0.8
1,130,846 - CSW01_05420 0.17 -0.0
1,130,851 - CSW01_05420 0.19 -0.2
1,130,851 - CSW01_05420 0.19 +0.1
1,130,851 - CSW01_05420 0.19 +0.8
1,131,031 + CSW01_05420 0.79 -1.6
1,131,039 - CSW01_05420 0.81 -0.0
1,131,126 + -0.5
1,131,130 + -0.7
1,131,138 - -0.4
1,131,144 + -0.3
1,131,230 + CSW01_05425 0.11 +1.2
1,131,393 - CSW01_05425 0.33 +0.2
1,131,415 - CSW01_05425 0.36 -0.2
1,131,504 + CSW01_05425 0.48 -0.8
1,131,512 - CSW01_05425 0.49 +0.2
1,131,602 + CSW01_05425 0.61 -0.2
1,131,648 + CSW01_05425 0.67 +0.7
1,131,648 + CSW01_05425 0.67 +0.5
1,131,656 - CSW01_05425 0.69 +0.7
1,131,656 - CSW01_05425 0.69 +0.4
1,131,713 + CSW01_05425 0.76 +0.1
1,131,713 + CSW01_05425 0.76 +0.6
1,131,721 - CSW01_05425 0.77 +0.5

Or see this region's nucleotide sequence