Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04750

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04745 and CSW01_04750 overlap by 4 nucleotidesCSW01_04750 and CSW01_04755 overlap by 11 nucleotidesCSW01_04755 and CSW01_04760 are separated by 195 nucleotides CSW01_04745: CSW01_04745 - glycosyltransferase family 1 protein, at 986,652 to 987,749 _04745 CSW01_04750: CSW01_04750 - aspartate-semialdehyde dehydrogenase, at 987,746 to 988,918 _04750 CSW01_04755: CSW01_04755 - glycosyltransferase, at 988,908 to 989,660 _04755 CSW01_04760: CSW01_04760 - hypothetical protein, at 989,856 to 990,671 _04760 Position (kb) 987 988 989Strain fitness (log2 ratio) -2 -1 0 1at 986.746 kb on - strandat 986.747 kb on - strandat 986.798 kb on + strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 986.813 kb on - strand, within CSW01_04745at 987.052 kb on + strand, within CSW01_04745at 987.136 kb on + strand, within CSW01_04745at 987.144 kb on - strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.161 kb on + strand, within CSW01_04745at 987.164 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.169 kb on - strand, within CSW01_04745at 987.242 kb on + strand, within CSW01_04745at 987.242 kb on + strand, within CSW01_04745at 987.272 kb on - strand, within CSW01_04745at 987.295 kb on + strand, within CSW01_04745at 987.303 kb on - strand, within CSW01_04745at 987.303 kb on - strand, within CSW01_04745at 987.308 kb on + strand, within CSW01_04745at 987.365 kb on - strand, within CSW01_04745at 987.561 kb on + strand, within CSW01_04745at 987.561 kb on + strand, within CSW01_04745at 987.781 kb on - strandat 987.964 kb on + strand, within CSW01_04750at 987.964 kb on + strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 987.972 kb on - strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.181 kb on + strand, within CSW01_04750at 988.242 kb on + strand, within CSW01_04750at 988.250 kb on - strand, within CSW01_04750at 988.250 kb on - strand, within CSW01_04750at 988.365 kb on + strand, within CSW01_04750at 988.375 kb on + strand, within CSW01_04750at 988.396 kb on + strand, within CSW01_04750at 988.396 kb on + strand, within CSW01_04750at 988.404 kb on - strand, within CSW01_04750at 988.409 kb on - strand, within CSW01_04750at 988.421 kb on + strand, within CSW01_04750at 988.429 kb on - strand, within CSW01_04750at 988.433 kb on + strand, within CSW01_04750at 988.433 kb on + strand, within CSW01_04750at 988.441 kb on - strand, within CSW01_04750at 988.531 kb on - strand, within CSW01_04750at 988.538 kb on + strand, within CSW01_04750at 988.554 kb on - strand, within CSW01_04750at 988.624 kb on + strand, within CSW01_04750at 988.686 kb on + strand, within CSW01_04750at 988.688 kb on + strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.694 kb on - strand, within CSW01_04750at 988.700 kb on + strand, within CSW01_04750at 988.719 kb on - strand, within CSW01_04750at 988.730 kb on - strand, within CSW01_04750at 988.781 kb on + strand, within CSW01_04750at 988.791 kb on - strand, within CSW01_04750at 988.791 kb on - strand, within CSW01_04750at 988.825 kb on + strandat 988.832 kb on - strandat 988.865 kb on - strandat 988.865 kb on - strandat 988.872 kb on - strandat 989.014 kb on + strand, within CSW01_04755at 989.022 kb on - strand, within CSW01_04755at 989.051 kb on + strand, within CSW01_04755at 989.084 kb on + strand, within CSW01_04755at 989.084 kb on + strand, within CSW01_04755at 989.084 kb on + strand, within CSW01_04755at 989.087 kb on - strand, within CSW01_04755at 989.092 kb on - strand, within CSW01_04755at 989.119 kb on + strand, within CSW01_04755at 989.129 kb on + strand, within CSW01_04755at 989.137 kb on - strand, within CSW01_04755at 989.282 kb on + strand, within CSW01_04755at 989.295 kb on - strand, within CSW01_04755at 989.309 kb on - strand, within CSW01_04755at 989.309 kb on - strand, within CSW01_04755at 989.435 kb on - strand, within CSW01_04755at 989.440 kb on + strand, within CSW01_04755at 989.440 kb on + strand, within CSW01_04755at 989.440 kb on + strand, within CSW01_04755at 989.493 kb on - strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.520 kb on + strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.528 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.560 kb on - strand, within CSW01_04755at 989.568 kb on + strand, within CSW01_04755at 989.620 kb on - strandat 989.816 kb on + strandat 989.828 kb on + strandat 989.880 kb on - strandat 989.916 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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986,746 - +1.3
986,747 - -0.7
986,798 + CSW01_04745 0.13 +0.3
986,813 - CSW01_04745 0.15 +0.9
986,813 - CSW01_04745 0.15 +0.9
986,813 - CSW01_04745 0.15 -0.0
987,052 + CSW01_04745 0.36 +0.7
987,136 + CSW01_04745 0.44 +0.3
987,144 - CSW01_04745 0.45 +0.2
987,161 + CSW01_04745 0.46 -0.1
987,161 + CSW01_04745 0.46 +0.5
987,161 + CSW01_04745 0.46 +0.1
987,161 + CSW01_04745 0.46 -1.4
987,161 + CSW01_04745 0.46 +1.3
987,161 + CSW01_04745 0.46 -0.4
987,161 + CSW01_04745 0.46 +0.6
987,161 + CSW01_04745 0.46 +0.4
987,161 + CSW01_04745 0.46 +0.5
987,161 + CSW01_04745 0.46 -2.1
987,164 - CSW01_04745 0.47 -0.1
987,169 - CSW01_04745 0.47 +1.7
987,169 - CSW01_04745 0.47 -0.3
987,169 - CSW01_04745 0.47 +0.6
987,169 - CSW01_04745 0.47 -0.8
987,169 - CSW01_04745 0.47 +0.1
987,169 - CSW01_04745 0.47 -0.2
987,169 - CSW01_04745 0.47 -0.2
987,242 + CSW01_04745 0.54 +0.6
987,242 + CSW01_04745 0.54 -0.6
987,272 - CSW01_04745 0.56 -0.1
987,295 + CSW01_04745 0.59 +0.2
987,303 - CSW01_04745 0.59 -0.3
987,303 - CSW01_04745 0.59 -0.2
987,308 + CSW01_04745 0.60 -1.8
987,365 - CSW01_04745 0.65 -1.0
987,561 + CSW01_04745 0.83 +0.4
987,561 + CSW01_04745 0.83 -0.2
987,781 - -1.0
987,964 + CSW01_04750 0.19 -0.0
987,964 + CSW01_04750 0.19 +0.4
987,972 - CSW01_04750 0.19 -0.3
987,972 - CSW01_04750 0.19 -0.6
987,972 - CSW01_04750 0.19 +0.6
987,972 - CSW01_04750 0.19 +0.6
987,972 - CSW01_04750 0.19 +1.4
988,181 + CSW01_04750 0.37 -0.4
988,181 + CSW01_04750 0.37 -0.4
988,181 + CSW01_04750 0.37 +0.8
988,242 + CSW01_04750 0.42 +0.0
988,250 - CSW01_04750 0.43 +0.3
988,250 - CSW01_04750 0.43 -0.4
988,365 + CSW01_04750 0.53 +0.0
988,375 + CSW01_04750 0.54 +0.1
988,396 + CSW01_04750 0.55 -0.0
988,396 + CSW01_04750 0.55 +0.2
988,404 - CSW01_04750 0.56 -0.7
988,409 - CSW01_04750 0.57 -0.3
988,421 + CSW01_04750 0.58 +0.3
988,429 - CSW01_04750 0.58 -0.0
988,433 + CSW01_04750 0.59 -0.5
988,433 + CSW01_04750 0.59 -0.8
988,441 - CSW01_04750 0.59 -0.1
988,531 - CSW01_04750 0.67 +0.4
988,538 + CSW01_04750 0.68 +0.7
988,554 - CSW01_04750 0.69 -0.2
988,624 + CSW01_04750 0.75 +0.2
988,686 + CSW01_04750 0.80 -0.8
988,688 + CSW01_04750 0.80 -0.0
988,694 - CSW01_04750 0.81 +0.4
988,694 - CSW01_04750 0.81 -0.5
988,694 - CSW01_04750 0.81 +1.7
988,700 + CSW01_04750 0.81 -0.6
988,719 - CSW01_04750 0.83 +0.2
988,730 - CSW01_04750 0.84 +0.3
988,781 + CSW01_04750 0.88 +0.1
988,791 - CSW01_04750 0.89 +0.9
988,791 - CSW01_04750 0.89 +0.5
988,825 + +0.4
988,832 - +0.9
988,865 - +0.4
988,865 - +0.3
988,872 - -0.1
989,014 + CSW01_04755 0.14 +0.2
989,022 - CSW01_04755 0.15 +0.4
989,051 + CSW01_04755 0.19 +0.3
989,084 + CSW01_04755 0.23 +0.0
989,084 + CSW01_04755 0.23 +1.3
989,084 + CSW01_04755 0.23 +1.1
989,087 - CSW01_04755 0.24 +0.3
989,092 - CSW01_04755 0.24 +1.1
989,119 + CSW01_04755 0.28 -0.9
989,129 + CSW01_04755 0.29 +1.7
989,137 - CSW01_04755 0.30 -0.7
989,282 + CSW01_04755 0.50 -0.2
989,295 - CSW01_04755 0.51 +0.7
989,309 - CSW01_04755 0.53 -1.3
989,309 - CSW01_04755 0.53 +1.1
989,435 - CSW01_04755 0.70 +1.4
989,440 + CSW01_04755 0.71 -0.2
989,440 + CSW01_04755 0.71 -0.2
989,440 + CSW01_04755 0.71 +0.6
989,493 - CSW01_04755 0.78 -0.1
989,520 + CSW01_04755 0.81 +0.5
989,520 + CSW01_04755 0.81 +0.6
989,520 + CSW01_04755 0.81 -0.3
989,520 + CSW01_04755 0.81 -0.9
989,520 + CSW01_04755 0.81 -0.2
989,520 + CSW01_04755 0.81 -0.1
989,520 + CSW01_04755 0.81 +0.1
989,520 + CSW01_04755 0.81 +0.5
989,520 + CSW01_04755 0.81 +0.3
989,520 + CSW01_04755 0.81 -1.2
989,520 + CSW01_04755 0.81 +0.7
989,528 - CSW01_04755 0.82 -0.7
989,528 - CSW01_04755 0.82 -0.1
989,528 - CSW01_04755 0.82 -0.2
989,528 - CSW01_04755 0.82 -0.5
989,528 - CSW01_04755 0.82 -0.4
989,528 - CSW01_04755 0.82 -0.2
989,528 - CSW01_04755 0.82 +0.2
989,528 - CSW01_04755 0.82 +1.1
989,528 - CSW01_04755 0.82 +0.4
989,528 - CSW01_04755 0.82 -0.2
989,560 - CSW01_04755 0.87 +0.3
989,560 - CSW01_04755 0.87 +0.5
989,560 - CSW01_04755 0.87 -0.9
989,560 - CSW01_04755 0.87 +0.8
989,560 - CSW01_04755 0.87 -0.1
989,560 - CSW01_04755 0.87 +0.3
989,560 - CSW01_04755 0.87 +0.1
989,568 + CSW01_04755 0.88 -0.2
989,620 - +0.1
989,816 + -0.6
989,828 + -0.8
989,880 - -0.5
989,916 + -0.3

Or see this region's nucleotide sequence