Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03640

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03635 and CSW01_03640 are separated by 12 nucleotidesCSW01_03640 and CSW01_03645 are separated by 66 nucleotidesCSW01_03645 and CSW01_03650 are separated by 110 nucleotides CSW01_03635: CSW01_03635 - 3-deoxy-7-phosphoheptulonate synthase, at 742,278 to 743,351 _03635 CSW01_03640: CSW01_03640 - bifunctional chorismate mutase/prephenate dehydrogenase, at 743,364 to 744,491 _03640 CSW01_03645: CSW01_03645 - PilZ domain-containing protein, at 744,558 to 744,989 _03645 CSW01_03650: CSW01_03650 - energy-dependent translational throttle protein EttA, at 745,100 to 746,767 _03650 Position (kb) 743 744 745Strain fitness (log2 ratio) -2 -1 0 1 2at 742.374 kb on - strandat 742.374 kb on - strandat 742.448 kb on + strand, within CSW01_03635at 742.485 kb on + strand, within CSW01_03635at 742.519 kb on + strand, within CSW01_03635at 742.546 kb on - strand, within CSW01_03635at 742.546 kb on - strand, within CSW01_03635at 742.848 kb on + strand, within CSW01_03635at 742.848 kb on + strand, within CSW01_03635at 742.926 kb on + strand, within CSW01_03635at 742.926 kb on + strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.934 kb on - strand, within CSW01_03635at 742.940 kb on + strand, within CSW01_03635at 742.947 kb on + strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.948 kb on - strand, within CSW01_03635at 742.955 kb on - strand, within CSW01_03635at 742.955 kb on - strand, within CSW01_03635at 743.034 kb on - strand, within CSW01_03635at 743.220 kb on - strand, within CSW01_03635at 743.324 kb on - strandat 743.355 kb on + strandat 743.363 kb on - strandat 743.363 kb on - strandat 743.363 kb on - strandat 743.368 kb on - strandat 743.467 kb on - strandat 743.559 kb on - strand, within CSW01_03640at 743.641 kb on + strand, within CSW01_03640at 743.650 kb on - strand, within CSW01_03640at 743.698 kb on - strand, within CSW01_03640at 743.750 kb on - strand, within CSW01_03640at 743.767 kb on + strand, within CSW01_03640at 743.780 kb on + strand, within CSW01_03640at 743.788 kb on - strand, within CSW01_03640at 743.906 kb on + strand, within CSW01_03640at 743.934 kb on + strand, within CSW01_03640at 743.966 kb on - strand, within CSW01_03640at 743.973 kb on + strand, within CSW01_03640at 744.001 kb on - strand, within CSW01_03640at 744.031 kb on + strand, within CSW01_03640at 744.037 kb on - strand, within CSW01_03640at 744.039 kb on - strand, within CSW01_03640at 744.106 kb on + strand, within CSW01_03640at 744.162 kb on - strand, within CSW01_03640at 744.220 kb on + strand, within CSW01_03640at 744.233 kb on - strand, within CSW01_03640at 744.405 kb on - strandat 744.405 kb on - strandat 744.486 kb on + strandat 744.486 kb on + strandat 744.494 kb on - strandat 744.494 kb on - strandat 744.524 kb on + strandat 744.578 kb on - strandat 744.640 kb on - strand, within CSW01_03645at 744.658 kb on - strand, within CSW01_03645at 744.728 kb on + strand, within CSW01_03645at 744.811 kb on - strand, within CSW01_03645at 744.811 kb on - strand, within CSW01_03645at 744.811 kb on - strand, within CSW01_03645at 744.811 kb on - strand, within CSW01_03645at 744.813 kb on + strand, within CSW01_03645at 744.847 kb on + strand, within CSW01_03645at 744.872 kb on + strand, within CSW01_03645at 744.872 kb on + strand, within CSW01_03645at 744.872 kb on + strand, within CSW01_03645at 744.872 kb on + strand, within CSW01_03645at 744.875 kb on - strand, within CSW01_03645at 744.876 kb on - strand, within CSW01_03645at 744.987 kb on - strandat 745.049 kb on + strandat 745.103 kb on - strandat 745.181 kb on - strandat 745.228 kb on + strandat 745.282 kb on + strand, within CSW01_03650at 745.282 kb on + strand, within CSW01_03650at 745.290 kb on - strand, within CSW01_03650at 745.331 kb on + strand, within CSW01_03650at 745.413 kb on + strand, within CSW01_03650at 745.413 kb on + strand, within CSW01_03650at 745.413 kb on + strand, within CSW01_03650at 745.421 kb on - strand, within CSW01_03650at 745.421 kb on - strand, within CSW01_03650at 745.425 kb on + strand, within CSW01_03650at 745.425 kb on + strand, within CSW01_03650at 745.425 kb on + strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.433 kb on - strand, within CSW01_03650at 745.477 kb on + strand, within CSW01_03650

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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742,374 - +0.2
742,374 - -0.1
742,448 + CSW01_03635 0.16 +1.2
742,485 + CSW01_03635 0.19 +1.5
742,519 + CSW01_03635 0.22 +1.1
742,546 - CSW01_03635 0.25 +1.2
742,546 - CSW01_03635 0.25 +0.2
742,848 + CSW01_03635 0.53 +0.1
742,848 + CSW01_03635 0.53 +0.2
742,926 + CSW01_03635 0.60 -0.4
742,926 + CSW01_03635 0.60 +1.2
742,934 - CSW01_03635 0.61 -0.4
742,934 - CSW01_03635 0.61 +0.7
742,934 - CSW01_03635 0.61 +1.3
742,940 + CSW01_03635 0.62 -0.2
742,947 + CSW01_03635 0.62 -0.5
742,948 - CSW01_03635 0.62 +0.6
742,948 - CSW01_03635 0.62 +0.1
742,948 - CSW01_03635 0.62 -0.5
742,955 - CSW01_03635 0.63 -0.2
742,955 - CSW01_03635 0.63 +0.3
743,034 - CSW01_03635 0.70 -1.3
743,220 - CSW01_03635 0.88 +0.5
743,324 - +1.5
743,355 + +0.8
743,363 - -0.2
743,363 - +0.5
743,363 - -0.2
743,368 - -1.5
743,467 - +0.5
743,559 - CSW01_03640 0.17 +0.7
743,641 + CSW01_03640 0.25 -0.2
743,650 - CSW01_03640 0.25 +0.4
743,698 - CSW01_03640 0.30 +0.5
743,750 - CSW01_03640 0.34 +0.4
743,767 + CSW01_03640 0.36 +0.4
743,780 + CSW01_03640 0.37 -0.0
743,788 - CSW01_03640 0.38 +1.2
743,906 + CSW01_03640 0.48 +0.7
743,934 + CSW01_03640 0.51 +1.2
743,966 - CSW01_03640 0.53 -0.1
743,973 + CSW01_03640 0.54 +0.8
744,001 - CSW01_03640 0.56 +0.5
744,031 + CSW01_03640 0.59 -0.1
744,037 - CSW01_03640 0.60 -0.1
744,039 - CSW01_03640 0.60 +0.2
744,106 + CSW01_03640 0.66 +0.6
744,162 - CSW01_03640 0.71 +1.0
744,220 + CSW01_03640 0.76 +0.6
744,233 - CSW01_03640 0.77 +0.8
744,405 - -1.0
744,405 - +2.0
744,486 + +1.0
744,486 + +2.6
744,494 - -0.2
744,494 - +0.4
744,524 + +0.7
744,578 - +0.2
744,640 - CSW01_03645 0.19 +0.4
744,658 - CSW01_03645 0.23 -0.2
744,728 + CSW01_03645 0.39 -0.9
744,811 - CSW01_03645 0.59 +0.0
744,811 - CSW01_03645 0.59 +0.3
744,811 - CSW01_03645 0.59 +1.3
744,811 - CSW01_03645 0.59 +1.5
744,813 + CSW01_03645 0.59 -0.7
744,847 + CSW01_03645 0.67 +0.5
744,872 + CSW01_03645 0.73 +0.5
744,872 + CSW01_03645 0.73 +0.3
744,872 + CSW01_03645 0.73 -0.7
744,872 + CSW01_03645 0.73 +0.1
744,875 - CSW01_03645 0.73 -2.0
744,876 - CSW01_03645 0.74 +1.9
744,987 - -0.5
745,049 + -0.2
745,103 - -1.6
745,181 - +0.6
745,228 + +2.1
745,282 + CSW01_03650 0.11 +0.6
745,282 + CSW01_03650 0.11 -0.0
745,290 - CSW01_03650 0.11 -1.9
745,331 + CSW01_03650 0.14 +1.1
745,413 + CSW01_03650 0.19 +0.3
745,413 + CSW01_03650 0.19 +0.7
745,413 + CSW01_03650 0.19 -2.4
745,421 - CSW01_03650 0.19 -0.3
745,421 - CSW01_03650 0.19 -0.1
745,425 + CSW01_03650 0.19 +0.5
745,425 + CSW01_03650 0.19 -0.4
745,425 + CSW01_03650 0.19 +0.2
745,433 - CSW01_03650 0.20 +0.8
745,433 - CSW01_03650 0.20 -0.6
745,433 - CSW01_03650 0.20 +0.1
745,433 - CSW01_03650 0.20 +0.3
745,433 - CSW01_03650 0.20 +0.2
745,477 + CSW01_03650 0.23 +0.7

Or see this region's nucleotide sequence