Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03110

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03100 and CSW01_03105 are separated by 295 nucleotidesCSW01_03105 and CSW01_03110 are separated by 74 nucleotidesCSW01_03110 and CSW01_03115 are separated by 147 nucleotides CSW01_03100: CSW01_03100 - TetR/AcrR family transcriptional regulator, at 611,307 to 611,918 _03100 CSW01_03105: CSW01_03105 - hypoxanthine phosphoribosyltransferase, at 612,214 to 612,747 _03105 CSW01_03110: CSW01_03110 - carbonate dehydratase, at 612,822 to 613,490 _03110 CSW01_03115: CSW01_03115 - SulP family inorganic anion transporter, at 613,638 to 615,284 _03115 Position (kb) 612 613 614Strain fitness (log2 ratio) -2 -1 0 1 2at 611.922 kb on + strandat 611.930 kb on - strandat 611.930 kb on - strandat 611.930 kb on - strandat 611.930 kb on - strandat 612.012 kb on - strandat 612.012 kb on - strandat 612.085 kb on + strandat 612.085 kb on + strandat 612.099 kb on + strandat 612.099 kb on + strandat 612.163 kb on - strandat 612.167 kb on + strandat 612.193 kb on + strandat 612.212 kb on + strandat 612.282 kb on + strand, within CSW01_03105at 612.410 kb on + strand, within CSW01_03105at 612.420 kb on + strand, within CSW01_03105at 612.437 kb on + strand, within CSW01_03105at 612.448 kb on - strand, within CSW01_03105at 612.477 kb on + strand, within CSW01_03105at 612.566 kb on + strand, within CSW01_03105at 612.575 kb on - strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.592 kb on + strand, within CSW01_03105at 612.600 kb on - strand, within CSW01_03105at 612.610 kb on - strand, within CSW01_03105at 612.711 kb on + strandat 612.726 kb on + strandat 612.727 kb on + strandat 612.793 kb on - strandat 612.795 kb on + strandat 612.803 kb on - strandat 612.803 kb on - strandat 612.810 kb on - strandat 612.869 kb on - strandat 612.892 kb on + strand, within CSW01_03110at 612.900 kb on - strand, within CSW01_03110at 612.907 kb on - strand, within CSW01_03110at 612.917 kb on - strand, within CSW01_03110at 612.946 kb on - strand, within CSW01_03110at 612.947 kb on - strand, within CSW01_03110at 612.994 kb on - strand, within CSW01_03110at 613.012 kb on - strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.020 kb on + strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.028 kb on - strand, within CSW01_03110at 613.068 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.103 kb on + strand, within CSW01_03110at 613.111 kb on - strand, within CSW01_03110at 613.111 kb on - strand, within CSW01_03110at 613.263 kb on + strand, within CSW01_03110at 613.271 kb on - strand, within CSW01_03110at 613.323 kb on + strand, within CSW01_03110at 613.442 kb on + strandat 613.442 kb on + strandat 613.459 kb on - strandat 613.570 kb on + strandat 613.622 kb on + strandat 613.682 kb on + strandat 613.690 kb on - strandat 613.716 kb on + strandat 613.753 kb on + strandat 613.764 kb on + strandat 613.764 kb on + strandat 613.764 kb on + strandat 613.772 kb on - strandat 613.772 kb on - strandat 613.816 kb on + strand, within CSW01_03115at 613.889 kb on + strand, within CSW01_03115at 613.902 kb on - strand, within CSW01_03115at 613.902 kb on - strand, within CSW01_03115at 613.918 kb on + strand, within CSW01_03115at 613.992 kb on - strand, within CSW01_03115at 614.003 kb on - strand, within CSW01_03115at 614.005 kb on + strand, within CSW01_03115at 614.010 kb on + strand, within CSW01_03115at 614.018 kb on - strand, within CSW01_03115at 614.107 kb on - strand, within CSW01_03115at 614.306 kb on - strand, within CSW01_03115at 614.306 kb on - strand, within CSW01_03115at 614.321 kb on - strand, within CSW01_03115at 614.387 kb on - strand, within CSW01_03115at 614.396 kb on + strand, within CSW01_03115at 614.404 kb on - strand, within CSW01_03115at 614.443 kb on + strand, within CSW01_03115at 614.480 kb on - strand, within CSW01_03115

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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611,922 + +0.7
611,930 - +1.0
611,930 - +0.4
611,930 - +0.2
611,930 - +0.2
612,012 - +0.9
612,012 - +0.6
612,085 + +2.2
612,085 + -0.4
612,099 + -0.4
612,099 + +0.3
612,163 - +0.4
612,167 + +0.4
612,193 + +0.9
612,212 + -0.9
612,282 + CSW01_03105 0.13 -0.1
612,410 + CSW01_03105 0.37 -0.4
612,420 + CSW01_03105 0.39 +2.1
612,437 + CSW01_03105 0.42 -1.1
612,448 - CSW01_03105 0.44 -0.5
612,477 + CSW01_03105 0.49 -0.3
612,566 + CSW01_03105 0.66 +0.9
612,575 - CSW01_03105 0.68 +0.0
612,592 + CSW01_03105 0.71 -0.2
612,592 + CSW01_03105 0.71 -2.2
612,592 + CSW01_03105 0.71 -0.4
612,592 + CSW01_03105 0.71 +0.6
612,592 + CSW01_03105 0.71 +0.0
612,600 - CSW01_03105 0.72 +0.1
612,610 - CSW01_03105 0.74 +0.3
612,711 + +0.1
612,726 + +1.5
612,727 + +1.3
612,793 - -0.1
612,795 + -0.6
612,803 - +0.3
612,803 - -0.1
612,810 - +0.9
612,869 - +0.1
612,892 + CSW01_03110 0.10 -0.4
612,900 - CSW01_03110 0.12 +0.4
612,907 - CSW01_03110 0.13 +0.5
612,917 - CSW01_03110 0.14 +1.3
612,946 - CSW01_03110 0.19 -1.4
612,947 - CSW01_03110 0.19 +0.5
612,994 - CSW01_03110 0.26 +0.1
613,012 - CSW01_03110 0.28 -0.0
613,020 + CSW01_03110 0.30 +1.0
613,020 + CSW01_03110 0.30 +1.5
613,020 + CSW01_03110 0.30 +0.0
613,020 + CSW01_03110 0.30 +1.5
613,028 - CSW01_03110 0.31 -0.3
613,028 - CSW01_03110 0.31 -0.5
613,028 - CSW01_03110 0.31 -0.1
613,028 - CSW01_03110 0.31 +0.2
613,068 + CSW01_03110 0.37 -0.3
613,103 + CSW01_03110 0.42 -0.7
613,103 + CSW01_03110 0.42 -0.7
613,103 + CSW01_03110 0.42 -1.0
613,103 + CSW01_03110 0.42 +0.3
613,111 - CSW01_03110 0.43 -0.1
613,111 - CSW01_03110 0.43 +1.3
613,263 + CSW01_03110 0.66 -0.9
613,271 - CSW01_03110 0.67 -0.5
613,323 + CSW01_03110 0.75 +0.1
613,442 + +0.1
613,442 + +0.1
613,459 - +0.8
613,570 + -0.1
613,622 + +0.3
613,682 + +0.0
613,690 - +0.5
613,716 + +0.3
613,753 + -0.3
613,764 + -0.1
613,764 + +0.0
613,764 + -0.1
613,772 - +1.0
613,772 - +0.4
613,816 + CSW01_03115 0.11 +0.4
613,889 + CSW01_03115 0.15 +0.5
613,902 - CSW01_03115 0.16 -0.5
613,902 - CSW01_03115 0.16 -0.2
613,918 + CSW01_03115 0.17 +0.0
613,992 - CSW01_03115 0.21 +0.6
614,003 - CSW01_03115 0.22 -0.6
614,005 + CSW01_03115 0.22 +0.3
614,010 + CSW01_03115 0.23 -0.5
614,018 - CSW01_03115 0.23 -0.7
614,107 - CSW01_03115 0.28 -0.4
614,306 - CSW01_03115 0.41 -0.6
614,306 - CSW01_03115 0.41 -0.7
614,321 - CSW01_03115 0.41 -0.3
614,387 - CSW01_03115 0.45 +0.4
614,396 + CSW01_03115 0.46 +0.6
614,404 - CSW01_03115 0.47 +0.3
614,443 + CSW01_03115 0.49 +1.1
614,480 - CSW01_03115 0.51 +0.6

Or see this region's nucleotide sequence