Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01025

Experiment: LB_0.5%bileacids_Anaerobic_180MIN_ZN17B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01015 and CSW01_01020 are separated by 84 nucleotidesCSW01_01020 and CSW01_01025 are separated by 474 nucleotidesCSW01_01025 and CSW01_01030 are separated by 74 nucleotides CSW01_01015: CSW01_01015 - DNA helicase II, at 194,215 to 196,386 _01015 CSW01_01020: CSW01_01020 - hypothetical protein, at 196,471 to 196,656 _01020 CSW01_01025: CSW01_01025 - LysE family translocator, at 197,131 to 197,799 _01025 CSW01_01030: CSW01_01030 - AraC family transcriptional regulator, at 197,874 to 198,686 _01030 Position (kb) 197 198Strain fitness (log2 ratio) -2 -1 0 1 2at 196.164 kb on - strand, within CSW01_01015at 196.178 kb on + strandat 196.178 kb on + strandat 196.181 kb on - strandat 196.186 kb on - strandat 196.186 kb on - strandat 196.354 kb on + strandat 196.362 kb on - strandat 196.380 kb on + strandat 196.380 kb on + strandat 196.380 kb on + strandat 196.388 kb on - strandat 196.388 kb on - strandat 196.390 kb on + strandat 196.499 kb on - strand, within CSW01_01020at 196.499 kb on - strand, within CSW01_01020at 196.499 kb on - strand, within CSW01_01020at 196.506 kb on + strand, within CSW01_01020at 196.548 kb on + strand, within CSW01_01020at 196.556 kb on - strand, within CSW01_01020at 196.605 kb on + strand, within CSW01_01020at 196.617 kb on + strand, within CSW01_01020at 196.639 kb on - strandat 196.745 kb on + strandat 196.750 kb on + strandat 196.758 kb on - strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.761 kb on + strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.769 kb on - strandat 196.887 kb on + strandat 196.894 kb on + strandat 196.895 kb on - strandat 196.904 kb on + strandat 196.940 kb on + strandat 196.942 kb on - strandat 197.137 kb on - strandat 197.154 kb on - strandat 197.154 kb on - strandat 197.197 kb on + strandat 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.205 kb on - strand, within CSW01_01025at 197.218 kb on - strand, within CSW01_01025at 197.219 kb on - strand, within CSW01_01025at 197.259 kb on + strand, within CSW01_01025at 197.304 kb on + strand, within CSW01_01025at 197.312 kb on - strand, within CSW01_01025at 197.312 kb on - strand, within CSW01_01025at 197.313 kb on - strand, within CSW01_01025at 197.338 kb on - strand, within CSW01_01025at 197.338 kb on - strand, within CSW01_01025at 197.349 kb on - strand, within CSW01_01025at 197.373 kb on - strand, within CSW01_01025at 197.380 kb on - strand, within CSW01_01025at 197.471 kb on - strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.472 kb on + strand, within CSW01_01025at 197.475 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.480 kb on - strand, within CSW01_01025at 197.485 kb on - strand, within CSW01_01025at 197.492 kb on + strand, within CSW01_01025at 197.492 kb on + strand, within CSW01_01025at 197.513 kb on + strand, within CSW01_01025at 197.536 kb on - strand, within CSW01_01025at 197.548 kb on - strand, within CSW01_01025at 197.566 kb on - strand, within CSW01_01025at 197.576 kb on + strand, within CSW01_01025at 197.693 kb on - strand, within CSW01_01025at 197.700 kb on + strand, within CSW01_01025at 197.700 kb on + strand, within CSW01_01025at 197.707 kb on + strand, within CSW01_01025at 197.708 kb on - strand, within CSW01_01025at 197.715 kb on - strand, within CSW01_01025at 197.743 kb on + strandat 197.767 kb on + strandat 197.775 kb on - strandat 197.776 kb on + strandat 197.889 kb on + strandat 197.899 kb on + strandat 197.918 kb on + strandat 197.934 kb on + strandat 197.967 kb on + strand, within CSW01_01030at 198.002 kb on + strand, within CSW01_01030at 198.014 kb on + strand, within CSW01_01030at 198.014 kb on + strand, within CSW01_01030at 198.027 kb on - strand, within CSW01_01030at 198.057 kb on + strand, within CSW01_01030at 198.065 kb on - strand, within CSW01_01030at 198.160 kb on + strand, within CSW01_01030at 198.160 kb on + strand, within CSW01_01030at 198.168 kb on - strand, within CSW01_01030at 198.178 kb on - strand, within CSW01_01030at 198.194 kb on + strand, within CSW01_01030at 198.194 kb on + strand, within CSW01_01030at 198.202 kb on - strand, within CSW01_01030at 198.202 kb on - strand, within CSW01_01030at 198.202 kb on - strand, within CSW01_01030at 198.204 kb on + strand, within CSW01_01030at 198.209 kb on + strand, within CSW01_01030at 198.209 kb on + strand, within CSW01_01030at 198.239 kb on + strand, within CSW01_01030at 198.239 kb on + strand, within CSW01_01030at 198.239 kb on + strand, within CSW01_01030at 198.239 kb on + strand, within CSW01_01030at 198.246 kb on + strand, within CSW01_01030at 198.278 kb on + strand, within CSW01_01030at 198.278 kb on + strand, within CSW01_01030at 198.286 kb on - strand, within CSW01_01030at 198.314 kb on + strand, within CSW01_01030at 198.330 kb on - strand, within CSW01_01030at 198.330 kb on - strand, within CSW01_01030at 198.356 kb on + strand, within CSW01_01030at 198.356 kb on + strand, within CSW01_01030at 198.356 kb on + strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.364 kb on - strand, within CSW01_01030at 198.401 kb on + strand, within CSW01_01030at 198.409 kb on - strand, within CSW01_01030at 198.429 kb on + strand, within CSW01_01030at 198.429 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.448 kb on + strand, within CSW01_01030at 198.456 kb on - strand, within CSW01_01030at 198.456 kb on - strand, within CSW01_01030at 198.484 kb on + strand, within CSW01_01030at 198.489 kb on + strand, within CSW01_01030at 198.489 kb on + strand, within CSW01_01030at 198.497 kb on - strand, within CSW01_01030at 198.497 kb on - strand, within CSW01_01030at 198.504 kb on + strand, within CSW01_01030at 198.512 kb on - strand, within CSW01_01030at 198.512 kb on - strand, within CSW01_01030at 198.512 kb on - strand, within CSW01_01030at 198.553 kb on + strand, within CSW01_01030at 198.630 kb on - strandat 198.630 kb on - strandat 198.630 kb on - strandat 198.657 kb on - strandat 198.729 kb on - strandat 198.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_180MIN_ZN17B
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196,164 - CSW01_01015 0.90 +0.7
196,178 + +0.1
196,178 + -0.3
196,181 - -0.5
196,186 - +0.3
196,186 - -0.3
196,354 + -0.4
196,362 - -0.9
196,380 + -0.7
196,380 + +0.3
196,380 + +0.6
196,388 - -1.2
196,388 - -0.0
196,390 + -1.2
196,499 - CSW01_01020 0.15 +0.6
196,499 - CSW01_01020 0.15 -1.1
196,499 - CSW01_01020 0.15 -0.7
196,506 + CSW01_01020 0.19 -0.0
196,548 + CSW01_01020 0.41 -1.9
196,556 - CSW01_01020 0.46 +1.0
196,605 + CSW01_01020 0.72 +0.7
196,617 + CSW01_01020 0.78 +0.2
196,639 - +0.7
196,745 + -0.3
196,750 + -0.6
196,758 - -0.1
196,761 + -0.1
196,761 + -0.1
196,761 + +0.1
196,761 + -1.3
196,761 + +0.0
196,761 + -0.1
196,761 + +1.1
196,761 + +0.0
196,761 + +0.2
196,761 + -1.2
196,761 + +0.0
196,769 - -0.4
196,769 - +1.2
196,769 - +0.4
196,769 - -0.0
196,769 - +0.9
196,769 - +0.3
196,769 - +0.3
196,769 - +0.8
196,769 - +0.6
196,769 - +0.2
196,769 - +2.5
196,769 - -0.3
196,887 + -1.6
196,894 + -1.1
196,895 - +0.5
196,904 + -0.1
196,940 + +0.5
196,942 - +0.4
197,137 - -0.0
197,154 - -0.1
197,154 - +0.2
197,197 + +0.7
197,205 - CSW01_01025 0.11 +0.5
197,205 - CSW01_01025 0.11 -0.6
197,205 - CSW01_01025 0.11 +0.4
197,205 - CSW01_01025 0.11 +0.0
197,218 - CSW01_01025 0.13 +0.1
197,219 - CSW01_01025 0.13 -0.9
197,259 + CSW01_01025 0.19 -0.2
197,304 + CSW01_01025 0.26 -1.8
197,312 - CSW01_01025 0.27 -2.3
197,312 - CSW01_01025 0.27 -0.3
197,313 - CSW01_01025 0.27 -0.0
197,338 - CSW01_01025 0.31 -0.6
197,338 - CSW01_01025 0.31 +1.3
197,349 - CSW01_01025 0.33 -0.4
197,373 - CSW01_01025 0.36 +0.2
197,380 - CSW01_01025 0.37 +0.1
197,471 - CSW01_01025 0.51 -0.5
197,472 + CSW01_01025 0.51 -0.4
197,472 + CSW01_01025 0.51 -1.1
197,472 + CSW01_01025 0.51 +0.1
197,472 + CSW01_01025 0.51 +0.3
197,472 + CSW01_01025 0.51 +0.3
197,475 - CSW01_01025 0.51 -0.5
197,480 - CSW01_01025 0.52 +0.0
197,480 - CSW01_01025 0.52 +0.2
197,480 - CSW01_01025 0.52 -0.4
197,480 - CSW01_01025 0.52 -0.7
197,480 - CSW01_01025 0.52 +0.5
197,480 - CSW01_01025 0.52 -0.3
197,480 - CSW01_01025 0.52 +0.7
197,480 - CSW01_01025 0.52 -1.2
197,480 - CSW01_01025 0.52 +0.4
197,480 - CSW01_01025 0.52 +0.3
197,480 - CSW01_01025 0.52 -1.6
197,485 - CSW01_01025 0.53 -0.4
197,492 + CSW01_01025 0.54 -0.6
197,492 + CSW01_01025 0.54 -2.5
197,513 + CSW01_01025 0.57 +0.3
197,536 - CSW01_01025 0.61 +0.3
197,548 - CSW01_01025 0.62 +0.4
197,566 - CSW01_01025 0.65 -0.1
197,576 + CSW01_01025 0.67 +0.7
197,693 - CSW01_01025 0.84 +0.4
197,700 + CSW01_01025 0.85 -0.5
197,700 + CSW01_01025 0.85 -0.3
197,707 + CSW01_01025 0.86 +0.1
197,708 - CSW01_01025 0.86 +0.1
197,715 - CSW01_01025 0.87 +0.1
197,743 + +2.7
197,767 + +0.4
197,775 - +1.9
197,776 + -0.8
197,889 + +0.2
197,899 + -0.4
197,918 + +0.0
197,934 + -0.2
197,967 + CSW01_01030 0.11 -0.1
198,002 + CSW01_01030 0.16 -1.1
198,014 + CSW01_01030 0.17 +0.5
198,014 + CSW01_01030 0.17 +0.8
198,027 - CSW01_01030 0.19 +0.5
198,057 + CSW01_01030 0.23 +0.3
198,065 - CSW01_01030 0.23 +0.2
198,160 + CSW01_01030 0.35 +0.2
198,160 + CSW01_01030 0.35 +0.4
198,168 - CSW01_01030 0.36 -0.1
198,178 - CSW01_01030 0.37 -0.7
198,194 + CSW01_01030 0.39 +0.4
198,194 + CSW01_01030 0.39 +1.2
198,202 - CSW01_01030 0.40 +0.3
198,202 - CSW01_01030 0.40 +0.3
198,202 - CSW01_01030 0.40 -0.5
198,204 + CSW01_01030 0.41 -0.1
198,209 + CSW01_01030 0.41 +0.3
198,209 + CSW01_01030 0.41 +0.0
198,239 + CSW01_01030 0.45 -1.1
198,239 + CSW01_01030 0.45 -0.2
198,239 + CSW01_01030 0.45 +1.4
198,239 + CSW01_01030 0.45 +0.1
198,246 + CSW01_01030 0.46 +0.7
198,278 + CSW01_01030 0.50 +0.3
198,278 + CSW01_01030 0.50 -0.1
198,286 - CSW01_01030 0.51 +0.3
198,314 + CSW01_01030 0.54 -0.1
198,330 - CSW01_01030 0.56 +1.1
198,330 - CSW01_01030 0.56 +0.2
198,356 + CSW01_01030 0.59 +0.3
198,356 + CSW01_01030 0.59 +1.8
198,356 + CSW01_01030 0.59 -0.6
198,364 - CSW01_01030 0.60 -1.0
198,364 - CSW01_01030 0.60 +1.2
198,364 - CSW01_01030 0.60 +0.4
198,364 - CSW01_01030 0.60 +1.2
198,364 - CSW01_01030 0.60 -1.3
198,364 - CSW01_01030 0.60 +0.1
198,401 + CSW01_01030 0.65 -1.6
198,409 - CSW01_01030 0.66 -0.1
198,429 + CSW01_01030 0.68 +0.5
198,429 + CSW01_01030 0.68 -0.5
198,448 + CSW01_01030 0.71 +0.1
198,448 + CSW01_01030 0.71 +1.3
198,448 + CSW01_01030 0.71 -0.7
198,448 + CSW01_01030 0.71 +0.5
198,448 + CSW01_01030 0.71 -1.3
198,448 + CSW01_01030 0.71 +0.3
198,448 + CSW01_01030 0.71 -0.2
198,448 + CSW01_01030 0.71 -0.1
198,456 - CSW01_01030 0.72 +0.2
198,456 - CSW01_01030 0.72 -0.2
198,484 + CSW01_01030 0.75 +2.1
198,489 + CSW01_01030 0.76 +0.2
198,489 + CSW01_01030 0.76 +0.7
198,497 - CSW01_01030 0.77 +0.1
198,497 - CSW01_01030 0.77 -0.2
198,504 + CSW01_01030 0.77 -0.3
198,512 - CSW01_01030 0.78 +1.0
198,512 - CSW01_01030 0.78 -0.2
198,512 - CSW01_01030 0.78 -0.3
198,553 + CSW01_01030 0.84 +0.2
198,630 - +0.2
198,630 - -0.0
198,630 - +0.6
198,657 - +0.5
198,729 - -0.2
198,781 - -0.4

Or see this region's nucleotide sequence