Experiment: L-tyrosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27475 and AO356_27480 are separated by 296 nucleotides AO356_27480 and AO356_27485 are separated by 45 nucleotides
AO356_27475: AO356_27475 - shikimate dehydrogenase, at 6,262,114 to 6,262,938
_27475
AO356_27480: AO356_27480 - hypothetical protein, at 6,263,235 to 6,264,242
_27480
AO356_27485: AO356_27485 - hypothetical protein, at 6,264,288 to 6,265,094
_27485
Position (kb)
6263
6264
6265 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6262.250 kb on + strand, within AO356_27475 at 6262.250 kb on + strand, within AO356_27475 at 6262.251 kb on - strand, within AO356_27475 at 6262.251 kb on - strand, within AO356_27475 at 6262.254 kb on + strand, within AO356_27475 at 6262.255 kb on - strand, within AO356_27475 at 6262.255 kb on - strand, within AO356_27475 at 6262.460 kb on + strand, within AO356_27475 at 6262.512 kb on + strand, within AO356_27475 at 6262.514 kb on + strand, within AO356_27475 at 6262.515 kb on - strand, within AO356_27475 at 6262.620 kb on - strand, within AO356_27475 at 6262.654 kb on + strand, within AO356_27475 at 6262.655 kb on - strand, within AO356_27475 at 6262.738 kb on - strand, within AO356_27475 at 6262.740 kb on - strand, within AO356_27475 at 6262.779 kb on + strand, within AO356_27475 at 6262.936 kb on + strand at 6262.936 kb on + strand at 6262.954 kb on + strand at 6262.954 kb on + strand at 6263.127 kb on + strand at 6263.160 kb on + strand at 6263.163 kb on - strand at 6263.211 kb on + strand at 6263.212 kb on - strand at 6263.212 kb on - strand at 6263.220 kb on - strand at 6263.221 kb on + strand at 6263.258 kb on - strand at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.460 kb on + strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.461 kb on - strand, within AO356_27480 at 6263.525 kb on + strand, within AO356_27480 at 6263.614 kb on + strand, within AO356_27480 at 6263.615 kb on - strand, within AO356_27480 at 6263.704 kb on - strand, within AO356_27480 at 6263.759 kb on + strand, within AO356_27480 at 6263.759 kb on + strand, within AO356_27480 at 6263.760 kb on - strand, within AO356_27480 at 6263.818 kb on + strand, within AO356_27480 at 6263.819 kb on - strand, within AO356_27480 at 6263.997 kb on + strand, within AO356_27480 at 6263.997 kb on + strand, within AO356_27480 at 6263.998 kb on - strand, within AO356_27480 at 6264.084 kb on + strand, within AO356_27480 at 6264.085 kb on - strand, within AO356_27480 at 6264.088 kb on - strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.135 kb on + strand, within AO356_27480 at 6264.192 kb on + strand at 6264.407 kb on - strand, within AO356_27485 at 6264.432 kb on + strand, within AO356_27485 at 6264.432 kb on + strand, within AO356_27485 at 6264.433 kb on - strand, within AO356_27485 at 6264.904 kb on + strand, within AO356_27485 at 6265.102 kb on + strand at 6265.103 kb on - strand at 6265.103 kb on - strand at 6265.168 kb on + strand at 6265.168 kb on + strand at 6265.179 kb on + strand at 6265.179 kb on + strand at 6265.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine (N) remove 6,262,250 + AO356_27475 0.16 -0.4 6,262,250 + AO356_27475 0.16 -0.6 6,262,251 - AO356_27475 0.17 +0.9 6,262,251 - AO356_27475 0.17 +0.0 6,262,254 + AO356_27475 0.17 -0.6 6,262,255 - AO356_27475 0.17 -0.1 6,262,255 - AO356_27475 0.17 -1.1 6,262,460 + AO356_27475 0.42 +0.0 6,262,512 + AO356_27475 0.48 +0.6 6,262,514 + AO356_27475 0.48 +0.8 6,262,515 - AO356_27475 0.49 -1.5 6,262,620 - AO356_27475 0.61 +0.0 6,262,654 + AO356_27475 0.65 +0.2 6,262,655 - AO356_27475 0.66 -0.4 6,262,738 - AO356_27475 0.76 +0.1 6,262,740 - AO356_27475 0.76 +0.6 6,262,779 + AO356_27475 0.81 -0.6 6,262,936 + -1.6 6,262,936 + -0.3 6,262,954 + -0.2 6,262,954 + +0.3 6,263,127 + -1.4 6,263,160 + -0.6 6,263,163 - +0.7 6,263,211 + +0.6 6,263,212 - -0.4 6,263,212 - +1.4 6,263,220 - +0.3 6,263,221 + -0.1 6,263,258 - +0.3 6,263,460 + AO356_27480 0.22 +0.7 6,263,460 + AO356_27480 0.22 +0.2 6,263,460 + AO356_27480 0.22 +0.3 6,263,460 + AO356_27480 0.22 +0.2 6,263,460 + AO356_27480 0.22 +1.3 6,263,460 + AO356_27480 0.22 -0.2 6,263,460 + AO356_27480 0.22 +0.7 6,263,461 - AO356_27480 0.22 +0.6 6,263,461 - AO356_27480 0.22 -0.0 6,263,461 - AO356_27480 0.22 -0.6 6,263,461 - AO356_27480 0.22 +0.3 6,263,525 + AO356_27480 0.29 -0.8 6,263,614 + AO356_27480 0.38 -0.6 6,263,615 - AO356_27480 0.38 +0.3 6,263,704 - AO356_27480 0.47 +0.1 6,263,759 + AO356_27480 0.52 -0.1 6,263,759 + AO356_27480 0.52 +0.8 6,263,760 - AO356_27480 0.52 -0.3 6,263,818 + AO356_27480 0.58 +0.5 6,263,819 - AO356_27480 0.58 -1.4 6,263,997 + AO356_27480 0.76 -0.5 6,263,997 + AO356_27480 0.76 -0.2 6,263,998 - AO356_27480 0.76 -0.3 6,264,084 + AO356_27480 0.84 -0.4 6,264,085 - AO356_27480 0.84 -1.0 6,264,088 - AO356_27480 0.85 +1.4 6,264,135 + AO356_27480 0.89 +0.8 6,264,135 + AO356_27480 0.89 -0.6 6,264,135 + AO356_27480 0.89 -1.0 6,264,135 + AO356_27480 0.89 +0.8 6,264,192 + -3.4 6,264,407 - AO356_27485 0.15 +0.2 6,264,432 + AO356_27485 0.18 +1.2 6,264,432 + AO356_27485 0.18 +0.3 6,264,433 - AO356_27485 0.18 -1.1 6,264,904 + AO356_27485 0.76 -1.3 6,265,102 + +1.3 6,265,103 - +0.0 6,265,103 - +1.3 6,265,168 + +0.3 6,265,168 + +0.0 6,265,179 + +1.2 6,265,179 + +0.9 6,265,228 - -1.2
Or see this region's nucleotide sequence