Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_22770

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_22765 and AO356_22770 are separated by 388 nucleotidesAO356_22770 and AO356_22775 are separated by 202 nucleotidesAO356_22775 and AO356_22780 are separated by 109 nucleotidesAO356_22780 and AO356_22785 are separated by 30 nucleotides AO356_22765: AO356_22765 - proline hydroxylase, at 5,083,473 to 5,084,201 _22765 AO356_22770: AO356_22770 - hypothetical protein, at 5,084,590 to 5,084,892 _22770 AO356_22775: AO356_22775 - hypothetical protein, at 5,085,095 to 5,085,445 _22775 AO356_22780: AO356_22780 - hypothetical protein, at 5,085,555 to 5,085,785 _22780 AO356_22785: AO356_22785 - hypothetical protein, at 5,085,816 to 5,086,097 _22785 Position (kb) 5084 5085Strain fitness (log2 ratio) -2 -1 0 1 2at 5083.602 kb on + strand, within AO356_22765at 5083.602 kb on + strand, within AO356_22765at 5083.602 kb on + strand, within AO356_22765at 5083.603 kb on - strand, within AO356_22765at 5083.603 kb on - strand, within AO356_22765at 5083.753 kb on + strand, within AO356_22765at 5083.753 kb on + strand, within AO356_22765at 5083.777 kb on + strand, within AO356_22765at 5083.792 kb on + strand, within AO356_22765at 5083.793 kb on - strand, within AO356_22765at 5083.793 kb on - strand, within AO356_22765at 5083.931 kb on - strand, within AO356_22765at 5083.931 kb on - strand, within AO356_22765at 5083.931 kb on - strand, within AO356_22765at 5083.981 kb on + strand, within AO356_22765at 5083.982 kb on - strand, within AO356_22765at 5083.987 kb on + strand, within AO356_22765at 5083.988 kb on - strand, within AO356_22765at 5084.053 kb on + strand, within AO356_22765at 5084.053 kb on + strand, within AO356_22765at 5084.054 kb on - strand, within AO356_22765at 5084.054 kb on - strand, within AO356_22765at 5084.054 kb on - strand, within AO356_22765at 5084.055 kb on + strand, within AO356_22765at 5084.056 kb on - strand, within AO356_22765at 5084.056 kb on - strand, within AO356_22765at 5084.056 kb on - strand, within AO356_22765at 5084.161 kb on - strandat 5084.161 kb on - strandat 5084.161 kb on - strandat 5084.161 kb on - strandat 5084.393 kb on - strandat 5084.402 kb on + strandat 5084.402 kb on + strandat 5084.403 kb on - strandat 5084.530 kb on + strandat 5084.530 kb on + strandat 5084.542 kb on + strandat 5084.542 kb on + strandat 5084.542 kb on + strandat 5084.542 kb on + strandat 5084.543 kb on - strandat 5084.543 kb on - strandat 5084.543 kb on - strandat 5084.543 kb on - strandat 5084.543 kb on - strandat 5084.543 kb on - strandat 5084.759 kb on + strand, within AO356_22770at 5084.759 kb on + strand, within AO356_22770at 5084.760 kb on - strand, within AO356_22770at 5084.760 kb on - strand, within AO356_22770at 5084.760 kb on - strand, within AO356_22770at 5084.840 kb on - strand, within AO356_22770at 5084.974 kb on + strandat 5084.974 kb on + strandat 5084.974 kb on + strandat 5084.974 kb on + strandat 5084.975 kb on - strandat 5084.975 kb on - strandat 5084.975 kb on - strandat 5084.978 kb on - strandat 5085.008 kb on + strandat 5085.080 kb on + strandat 5085.080 kb on + strandat 5085.081 kb on - strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.094 kb on + strandat 5085.095 kb on - strandat 5085.095 kb on - strandat 5085.095 kb on - strandat 5085.209 kb on + strand, within AO356_22775at 5085.209 kb on + strand, within AO356_22775at 5085.210 kb on - strand, within AO356_22775at 5085.210 kb on - strand, within AO356_22775at 5085.210 kb on - strand, within AO356_22775at 5085.433 kb on + strandat 5085.433 kb on + strandat 5085.484 kb on - strandat 5085.484 kb on - strandat 5085.596 kb on + strand, within AO356_22780at 5085.596 kb on + strand, within AO356_22780at 5085.596 kb on + strand, within AO356_22780at 5085.596 kb on + strand, within AO356_22780at 5085.597 kb on - strand, within AO356_22780at 5085.597 kb on - strand, within AO356_22780at 5085.597 kb on - strand, within AO356_22780at 5085.597 kb on - strand, within AO356_22780at 5085.597 kb on - strand, within AO356_22780at 5085.597 kb on - strand, within AO356_22780at 5085.597 kb on - strand, within AO356_22780at 5085.597 kb on - strand, within AO356_22780at 5085.600 kb on + strand, within AO356_22780at 5085.600 kb on + strand, within AO356_22780at 5085.600 kb on + strand, within AO356_22780at 5085.600 kb on + strand, within AO356_22780at 5085.601 kb on - strand, within AO356_22780at 5085.601 kb on - strand, within AO356_22780at 5085.745 kb on + strand, within AO356_22780at 5085.793 kb on + strandat 5085.802 kb on + strandat 5085.803 kb on - strandat 5085.817 kb on + strandat 5085.817 kb on + strandat 5085.817 kb on + strandat 5085.817 kb on + strandat 5085.818 kb on - strandat 5085.818 kb on - strandat 5085.821 kb on + strandat 5085.821 kb on + strandat 5085.822 kb on - strandat 5085.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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5,083,602 + AO356_22765 0.18 +0.0
5,083,602 + AO356_22765 0.18 -0.4
5,083,602 + AO356_22765 0.18 +0.9
5,083,603 - AO356_22765 0.18 +0.7
5,083,603 - AO356_22765 0.18 -0.6
5,083,753 + AO356_22765 0.38 +0.4
5,083,753 + AO356_22765 0.38 +0.4
5,083,777 + AO356_22765 0.42 +0.1
5,083,792 + AO356_22765 0.44 +1.4
5,083,793 - AO356_22765 0.44 -0.5
5,083,793 - AO356_22765 0.44 +1.1
5,083,931 - AO356_22765 0.63 +0.6
5,083,931 - AO356_22765 0.63 +1.4
5,083,931 - AO356_22765 0.63 -0.4
5,083,981 + AO356_22765 0.70 -1.0
5,083,982 - AO356_22765 0.70 +0.4
5,083,987 + AO356_22765 0.71 -0.0
5,083,988 - AO356_22765 0.71 -0.9
5,084,053 + AO356_22765 0.80 +1.0
5,084,053 + AO356_22765 0.80 +0.4
5,084,054 - AO356_22765 0.80 -0.4
5,084,054 - AO356_22765 0.80 -0.4
5,084,054 - AO356_22765 0.80 -0.5
5,084,055 + AO356_22765 0.80 +0.6
5,084,056 - AO356_22765 0.80 +0.4
5,084,056 - AO356_22765 0.80 +0.8
5,084,056 - AO356_22765 0.80 +1.0
5,084,161 - -0.7
5,084,161 - +0.4
5,084,161 - -0.7
5,084,161 - +0.4
5,084,393 - +0.2
5,084,402 + +0.4
5,084,402 + +0.1
5,084,403 - +1.6
5,084,530 + +0.1
5,084,530 + +0.5
5,084,542 + +0.1
5,084,542 + +0.1
5,084,542 + +0.5
5,084,542 + +0.0
5,084,543 - -0.0
5,084,543 - +0.9
5,084,543 - +0.2
5,084,543 - -0.2
5,084,543 - -0.0
5,084,543 - -1.4
5,084,759 + AO356_22770 0.56 +0.6
5,084,759 + AO356_22770 0.56 +0.3
5,084,760 - AO356_22770 0.56 +0.7
5,084,760 - AO356_22770 0.56 +0.1
5,084,760 - AO356_22770 0.56 +0.9
5,084,840 - AO356_22770 0.83 -0.2
5,084,974 + +0.5
5,084,974 + +1.3
5,084,974 + +0.7
5,084,974 + -0.4
5,084,975 - -1.2
5,084,975 - +0.6
5,084,975 - -0.3
5,084,978 - +0.1
5,085,008 + -1.2
5,085,080 + -0.2
5,085,080 + -0.6
5,085,081 - +0.4
5,085,094 + -0.8
5,085,094 + -1.0
5,085,094 + -0.4
5,085,094 + +0.4
5,085,094 + +1.0
5,085,094 + -0.1
5,085,094 + +1.4
5,085,094 + +0.4
5,085,094 + -0.7
5,085,094 + -0.2
5,085,095 - +0.5
5,085,095 - -0.8
5,085,095 - +0.4
5,085,209 + AO356_22775 0.32 -2.2
5,085,209 + AO356_22775 0.32 -1.2
5,085,210 - AO356_22775 0.33 -0.6
5,085,210 - AO356_22775 0.33 +0.3
5,085,210 - AO356_22775 0.33 +0.4
5,085,433 + +0.9
5,085,433 + -0.1
5,085,484 - -0.3
5,085,484 - +0.3
5,085,596 + AO356_22780 0.18 -0.1
5,085,596 + AO356_22780 0.18 -0.3
5,085,596 + AO356_22780 0.18 +0.9
5,085,596 + AO356_22780 0.18 +0.1
5,085,597 - AO356_22780 0.18 -0.0
5,085,597 - AO356_22780 0.18 -0.4
5,085,597 - AO356_22780 0.18 -0.4
5,085,597 - AO356_22780 0.18 -0.4
5,085,597 - AO356_22780 0.18 +0.7
5,085,597 - AO356_22780 0.18 +0.1
5,085,597 - AO356_22780 0.18 +0.8
5,085,597 - AO356_22780 0.18 +0.3
5,085,600 + AO356_22780 0.19 -2.0
5,085,600 + AO356_22780 0.19 +0.0
5,085,600 + AO356_22780 0.19 -0.0
5,085,600 + AO356_22780 0.19 +0.2
5,085,601 - AO356_22780 0.20 +0.3
5,085,601 - AO356_22780 0.20 +0.5
5,085,745 + AO356_22780 0.82 -1.9
5,085,793 + +0.9
5,085,802 + -0.3
5,085,803 - +0.6
5,085,817 + +0.1
5,085,817 + +2.4
5,085,817 + +0.6
5,085,817 + +0.3
5,085,818 - +0.4
5,085,818 - +1.1
5,085,821 + -1.9
5,085,821 + +1.6
5,085,822 - +0.6
5,085,822 - -0.3

Or see this region's nucleotide sequence