Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19795

Experiment: L-tyrosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_19790 and AO356_19795 are separated by 199 nucleotidesAO356_19795 and AO356_19800 are separated by 30 nucleotidesAO356_19800 and AO356_19805 overlap by 4 nucleotidesAO356_19805 and AO356_19810 are separated by 52 nucleotides AO356_19790: AO356_19790 - TonB-dependent receptor, at 4,438,191 to 4,440,314 _19790 AO356_19795: AO356_19795 - glycerol-3-phosphate dehydrogenase, at 4,440,514 to 4,441,539 _19795 AO356_19800: AO356_19800 - lipase, at 4,441,570 to 4,441,917 _19800 AO356_19805: AO356_19805 - phosphohistidine phosphatase, at 4,441,914 to 4,442,366 _19805 AO356_19810: AO356_19810 - esterase, at 4,442,419 to 4,442,862 _19810 Position (kb) 4440 4441 4442Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.542 kb on + strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.543 kb on - strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.546 kb on + strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.547 kb on - strand, within AO356_19790at 4439.548 kb on + strand, within AO356_19790at 4439.548 kb on + strand, within AO356_19790at 4439.548 kb on + strand, within AO356_19790at 4439.549 kb on - strand, within AO356_19790at 4439.549 kb on - strand, within AO356_19790at 4439.549 kb on - strand, within AO356_19790at 4439.872 kb on + strand, within AO356_19790at 4439.872 kb on + strand, within AO356_19790at 4439.873 kb on - strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.034 kb on + strand, within AO356_19790at 4440.035 kb on - strand, within AO356_19790at 4440.035 kb on - strand, within AO356_19790at 4440.035 kb on - strand, within AO356_19790at 4440.035 kb on - strand, within AO356_19790at 4440.204 kb on + strandat 4440.204 kb on + strandat 4440.205 kb on - strandat 4440.352 kb on + strandat 4440.352 kb on + strandat 4440.404 kb on + strandat 4440.404 kb on + strandat 4440.404 kb on + strandat 4440.405 kb on - strandat 4440.431 kb on + strandat 4440.469 kb on + strandat 4440.469 kb on + strandat 4440.470 kb on - strandat 4440.470 kb on - strandat 4440.470 kb on - strandat 4440.472 kb on - strandat 4440.472 kb on - strandat 4440.513 kb on + strandat 4440.513 kb on + strandat 4440.513 kb on + strandat 4440.514 kb on - strandat 4440.514 kb on - strandat 4441.093 kb on + strand, within AO356_19795at 4441.283 kb on - strand, within AO356_19795at 4441.408 kb on + strand, within AO356_19795at 4441.408 kb on + strand, within AO356_19795at 4441.408 kb on + strand, within AO356_19795at 4441.408 kb on + strand, within AO356_19795at 4441.409 kb on - strand, within AO356_19795at 4441.409 kb on - strand, within AO356_19795at 4441.409 kb on - strand, within AO356_19795at 4441.409 kb on - strand, within AO356_19795at 4441.409 kb on - strand, within AO356_19795at 4441.411 kb on - strand, within AO356_19795at 4441.598 kb on - strandat 4441.636 kb on + strand, within AO356_19800at 4441.636 kb on + strand, within AO356_19800at 4441.636 kb on + strand, within AO356_19800at 4441.637 kb on - strand, within AO356_19800at 4441.637 kb on - strand, within AO356_19800at 4441.711 kb on + strand, within AO356_19800at 4441.711 kb on + strand, within AO356_19800at 4441.711 kb on + strand, within AO356_19800at 4441.712 kb on - strand, within AO356_19800at 4441.712 kb on - strand, within AO356_19800at 4441.712 kb on - strand, within AO356_19800at 4441.913 kb on + strandat 4441.914 kb on - strandat 4441.914 kb on - strandat 4441.927 kb on + strandat 4441.928 kb on - strandat 4442.055 kb on + strand, within AO356_19805at 4442.055 kb on + strand, within AO356_19805at 4442.055 kb on + strand, within AO356_19805at 4442.056 kb on - strand, within AO356_19805at 4442.056 kb on - strand, within AO356_19805at 4442.056 kb on - strand, within AO356_19805at 4442.056 kb on - strand, within AO356_19805at 4442.067 kb on + strand, within AO356_19805at 4442.067 kb on + strand, within AO356_19805at 4442.067 kb on + strand, within AO356_19805at 4442.067 kb on + strand, within AO356_19805at 4442.068 kb on - strand, within AO356_19805at 4442.068 kb on - strand, within AO356_19805at 4442.068 kb on - strand, within AO356_19805at 4442.068 kb on - strand, within AO356_19805at 4442.176 kb on + strand, within AO356_19805at 4442.177 kb on - strand, within AO356_19805at 4442.220 kb on - strand, within AO356_19805at 4442.220 kb on - strand, within AO356_19805at 4442.220 kb on - strand, within AO356_19805at 4442.249 kb on - strand, within AO356_19805at 4442.249 kb on - strand, within AO356_19805at 4442.249 kb on - strand, within AO356_19805at 4442.369 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
remove
4,439,542 + AO356_19790 0.64 +1.5
4,439,542 + AO356_19790 0.64 +0.4
4,439,542 + AO356_19790 0.64 +1.6
4,439,542 + AO356_19790 0.64 +1.0
4,439,542 + AO356_19790 0.64 +0.5
4,439,542 + AO356_19790 0.64 +1.1
4,439,543 - AO356_19790 0.64 +1.1
4,439,543 - AO356_19790 0.64 +1.6
4,439,543 - AO356_19790 0.64 +1.4
4,439,543 - AO356_19790 0.64 +1.5
4,439,543 - AO356_19790 0.64 +0.8
4,439,543 - AO356_19790 0.64 +0.4
4,439,543 - AO356_19790 0.64 +0.7
4,439,543 - AO356_19790 0.64 +0.5
4,439,546 + AO356_19790 0.64 +1.7
4,439,546 + AO356_19790 0.64 +0.8
4,439,546 + AO356_19790 0.64 +1.3
4,439,546 + AO356_19790 0.64 +0.9
4,439,546 + AO356_19790 0.64 +0.8
4,439,546 + AO356_19790 0.64 +1.1
4,439,546 + AO356_19790 0.64 +1.4
4,439,546 + AO356_19790 0.64 +1.5
4,439,547 - AO356_19790 0.64 +1.7
4,439,547 - AO356_19790 0.64 +0.4
4,439,547 - AO356_19790 0.64 +0.5
4,439,547 - AO356_19790 0.64 +0.3
4,439,547 - AO356_19790 0.64 +0.9
4,439,548 + AO356_19790 0.64 +1.3
4,439,548 + AO356_19790 0.64 +2.0
4,439,548 + AO356_19790 0.64 +1.9
4,439,549 - AO356_19790 0.64 +1.1
4,439,549 - AO356_19790 0.64 +0.3
4,439,549 - AO356_19790 0.64 +0.9
4,439,872 + AO356_19790 0.79 +1.4
4,439,872 + AO356_19790 0.79 +1.6
4,439,873 - AO356_19790 0.79 +1.1
4,440,034 + AO356_19790 0.87 +0.7
4,440,034 + AO356_19790 0.87 +0.9
4,440,034 + AO356_19790 0.87 +1.4
4,440,034 + AO356_19790 0.87 +1.4
4,440,034 + AO356_19790 0.87 +0.6
4,440,035 - AO356_19790 0.87 +0.2
4,440,035 - AO356_19790 0.87 +0.9
4,440,035 - AO356_19790 0.87 +0.7
4,440,035 - AO356_19790 0.87 +0.7
4,440,204 + +0.5
4,440,204 + +1.0
4,440,205 - +1.0
4,440,352 + +1.1
4,440,352 + +1.0
4,440,404 + -1.7
4,440,404 + +0.8
4,440,404 + +0.9
4,440,405 - +0.2
4,440,431 + -0.6
4,440,469 + +0.7
4,440,469 + +1.7
4,440,470 - -1.3
4,440,470 - -1.5
4,440,470 - +1.2
4,440,472 - -2.0
4,440,472 - -2.3
4,440,513 + +0.3
4,440,513 + +0.0
4,440,513 + +0.7
4,440,514 - -2.3
4,440,514 - -0.8
4,441,093 + AO356_19795 0.56 -1.1
4,441,283 - AO356_19795 0.75 -1.6
4,441,408 + AO356_19795 0.87 -2.0
4,441,408 + AO356_19795 0.87 -3.6
4,441,408 + AO356_19795 0.87 +0.2
4,441,408 + AO356_19795 0.87 -1.1
4,441,409 - AO356_19795 0.87 -0.3
4,441,409 - AO356_19795 0.87 -1.7
4,441,409 - AO356_19795 0.87 -1.1
4,441,409 - AO356_19795 0.87 +0.2
4,441,409 - AO356_19795 0.87 -1.8
4,441,411 - AO356_19795 0.87 -0.3
4,441,598 - +0.7
4,441,636 + AO356_19800 0.19 -0.1
4,441,636 + AO356_19800 0.19 +0.4
4,441,636 + AO356_19800 0.19 -0.6
4,441,637 - AO356_19800 0.19 +0.5
4,441,637 - AO356_19800 0.19 -0.7
4,441,711 + AO356_19800 0.41 +0.7
4,441,711 + AO356_19800 0.41 +0.5
4,441,711 + AO356_19800 0.41 -0.1
4,441,712 - AO356_19800 0.41 -0.7
4,441,712 - AO356_19800 0.41 +0.6
4,441,712 - AO356_19800 0.41 -1.0
4,441,913 + -1.7
4,441,914 - +1.5
4,441,914 - +0.9
4,441,927 + -0.3
4,441,928 - +0.5
4,442,055 + AO356_19805 0.31 +0.4
4,442,055 + AO356_19805 0.31 +0.1
4,442,055 + AO356_19805 0.31 -0.4
4,442,056 - AO356_19805 0.31 -0.6
4,442,056 - AO356_19805 0.31 -0.1
4,442,056 - AO356_19805 0.31 +0.3
4,442,056 - AO356_19805 0.31 -0.2
4,442,067 + AO356_19805 0.34 +1.2
4,442,067 + AO356_19805 0.34 +0.2
4,442,067 + AO356_19805 0.34 -0.3
4,442,067 + AO356_19805 0.34 +0.0
4,442,068 - AO356_19805 0.34 -0.2
4,442,068 - AO356_19805 0.34 -2.2
4,442,068 - AO356_19805 0.34 +0.3
4,442,068 - AO356_19805 0.34 +0.3
4,442,176 + AO356_19805 0.58 -0.1
4,442,177 - AO356_19805 0.58 +0.4
4,442,220 - AO356_19805 0.68 -0.9
4,442,220 - AO356_19805 0.68 +0.4
4,442,220 - AO356_19805 0.68 +0.7
4,442,249 - AO356_19805 0.74 -0.1
4,442,249 - AO356_19805 0.74 +0.3
4,442,249 - AO356_19805 0.74 +0.3
4,442,369 - +0.5

Or see this region's nucleotide sequence