Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09515

Experiment: L-tyrosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09505 and AO356_09515 are separated by 620 nucleotidesAO356_09515 and AO356_09520 are separated by 81 nucleotidesAO356_09520 and AO356_09525 overlap by 8 nucleotidesAO356_09525 and AO356_09530 are separated by 24 nucleotides AO356_09505: AO356_09505 - ubiquinone biosynthesis methyltransferase UbiE, at 2,153,325 to 2,154,095 _09505 AO356_09515: AO356_09515 - ubiquinone biosynthesis protein UbiB, at 2,154,716 to 2,156,320 _09515 AO356_09520: AO356_09520 - phosphoribosyl-AMP cyclohydrolase, at 2,156,402 to 2,156,800 _09520 AO356_09525: AO356_09525 - phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data), at 2,156,793 to 2,157,125 _09525 AO356_09530: AO356_09530 - preprotein translocase subunit SecA, at 2,157,150 to 2,157,437 _09530 Position (kb) 2154 2155 2156 2157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2154.083 kb on + strandat 2154.452 kb on + strandat 2154.452 kb on + strandat 2156.484 kb on + strand, within AO356_09520at 2156.484 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.549 kb on + strand, within AO356_09520at 2156.550 kb on - strand, within AO356_09520at 2156.711 kb on + strand, within AO356_09520at 2156.777 kb on + strandat 2156.788 kb on + strandat 2156.788 kb on + strandat 2156.788 kb on + strandat 2156.788 kb on + strandat 2156.788 kb on + strandat 2156.788 kb on + strandat 2156.788 kb on + strandat 2156.788 kb on + strandat 2156.788 kb on + strandat 2156.789 kb on - strandat 2156.789 kb on - strandat 2156.862 kb on + strand, within AO356_09525at 2156.862 kb on + strand, within AO356_09525at 2156.862 kb on + strand, within AO356_09525at 2156.862 kb on + strand, within AO356_09525at 2156.862 kb on + strand, within AO356_09525at 2156.862 kb on + strand, within AO356_09525at 2156.862 kb on + strand, within AO356_09525at 2156.862 kb on + strand, within AO356_09525at 2156.862 kb on + strand, within AO356_09525at 2156.877 kb on + strand, within AO356_09525at 2156.877 kb on + strand, within AO356_09525at 2156.878 kb on - strand, within AO356_09525at 2157.055 kb on + strand, within AO356_09525

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine (N)
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2,154,083 + +1.5
2,154,452 + -0.1
2,154,452 + -1.3
2,156,484 + AO356_09520 0.21 -2.4
2,156,484 + AO356_09520 0.21 -2.1
2,156,549 + AO356_09520 0.37 -2.5
2,156,549 + AO356_09520 0.37 -2.7
2,156,549 + AO356_09520 0.37 -1.7
2,156,549 + AO356_09520 0.37 -3.3
2,156,549 + AO356_09520 0.37 -2.1
2,156,549 + AO356_09520 0.37 -2.0
2,156,549 + AO356_09520 0.37 -0.3
2,156,549 + AO356_09520 0.37 +0.3
2,156,549 + AO356_09520 0.37 -1.3
2,156,549 + AO356_09520 0.37 -3.2
2,156,550 - AO356_09520 0.37 -1.7
2,156,711 + AO356_09520 0.77 -0.9
2,156,777 + -0.2
2,156,788 + -1.6
2,156,788 + -0.0
2,156,788 + -1.1
2,156,788 + -0.4
2,156,788 + -0.8
2,156,788 + -1.5
2,156,788 + -2.6
2,156,788 + -0.5
2,156,788 + -1.6
2,156,789 - -0.7
2,156,789 - -0.9
2,156,862 + AO356_09525 0.21 -3.6
2,156,862 + AO356_09525 0.21 -3.3
2,156,862 + AO356_09525 0.21 -1.0
2,156,862 + AO356_09525 0.21 -1.8
2,156,862 + AO356_09525 0.21 -1.7
2,156,862 + AO356_09525 0.21 -2.5
2,156,862 + AO356_09525 0.21 -4.0
2,156,862 + AO356_09525 0.21 -2.3
2,156,862 + AO356_09525 0.21 -1.5
2,156,877 + AO356_09525 0.25 -3.6
2,156,877 + AO356_09525 0.25 -3.0
2,156,878 - AO356_09525 0.26 -0.0
2,157,055 + AO356_09525 0.79 -2.5

Or see this region's nucleotide sequence