Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_4156

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_4154 and Dshi_4155 overlap by 1 nucleotidesDshi_4155 and Dshi_4156 are separated by 176 nucleotidesDshi_4156 and Dshi_4157 are separated by 148 nucleotides Dshi_4154: Dshi_4154 - beta-lactamase domain protein (RefSeq), at 24 to 977 _4154 Dshi_4155: Dshi_4155 - hypothetical protein (RefSeq), at 977 to 1,759 _4155 Dshi_4156: Dshi_4156 - GAF modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 1,936 to 3,684 _4156 Dshi_4157: Dshi_4157 - monooxygenase protein, putative (RefSeq), at 3,833 to 5,632 _4157 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -1 0 1 2 3at 0.993 kb on + strandat 1.004 kb on + strandat 1.130 kb on - strand, within Dshi_4155at 1.233 kb on - strand, within Dshi_4155at 1.246 kb on - strand, within Dshi_4155at 1.248 kb on + strand, within Dshi_4155at 1.372 kb on + strand, within Dshi_4155at 1.416 kb on + strand, within Dshi_4155at 1.581 kb on - strand, within Dshi_4155at 1.942 kb on - strandat 2.014 kb on - strandat 2.297 kb on + strand, within Dshi_4156at 2.398 kb on + strand, within Dshi_4156at 2.398 kb on + strand, within Dshi_4156at 2.506 kb on + strand, within Dshi_4156at 2.716 kb on + strand, within Dshi_4156at 3.048 kb on - strand, within Dshi_4156at 3.129 kb on - strand, within Dshi_4156at 3.159 kb on - strand, within Dshi_4156at 3.383 kb on + strand, within Dshi_4156at 3.497 kb on - strand, within Dshi_4156at 3.626 kb on - strandat 3.681 kb on - strandat 3.857 kb on - strandat 3.976 kb on + strandat 4.027 kb on + strand, within Dshi_4157at 4.150 kb on - strand, within Dshi_4157at 4.480 kb on + strand, within Dshi_4157at 4.488 kb on - strand, within Dshi_4157at 4.501 kb on - strand, within Dshi_4157at 4.560 kb on + strand, within Dshi_4157at 4.568 kb on - strand, within Dshi_4157

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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993 + +0.9
1,004 + +0.9
1,130 - Dshi_4155 0.20 -0.1
1,233 - Dshi_4155 0.33 +0.6
1,246 - Dshi_4155 0.34 +0.8
1,248 + Dshi_4155 0.35 +0.0
1,372 + Dshi_4155 0.50 +1.2
1,416 + Dshi_4155 0.56 +1.9
1,581 - Dshi_4155 0.77 -0.8
1,942 - +0.7
2,014 - -0.4
2,297 + Dshi_4156 0.21 +0.6
2,398 + Dshi_4156 0.26 +1.0
2,398 + Dshi_4156 0.26 +1.4
2,506 + Dshi_4156 0.33 +0.5
2,716 + Dshi_4156 0.45 +0.4
3,048 - Dshi_4156 0.64 +0.2
3,129 - Dshi_4156 0.68 -0.4
3,159 - Dshi_4156 0.70 +1.2
3,383 + Dshi_4156 0.83 +0.6
3,497 - Dshi_4156 0.89 +0.4
3,626 - -0.6
3,681 - +0.7
3,857 - +2.9
3,976 + +1.1
4,027 + Dshi_4157 0.11 -0.6
4,150 - Dshi_4157 0.18 +0.2
4,480 + Dshi_4157 0.36 +0.1
4,488 - Dshi_4157 0.36 -1.0
4,501 - Dshi_4157 0.37 -0.2
4,560 + Dshi_4157 0.40 +0.8
4,568 - Dshi_4157 0.41 +0.3

Or see this region's nucleotide sequence