Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3039

Experiment: m.b. sodium fluoride 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3037 and Dshi_3038 are separated by 116 nucleotidesDshi_3038 and Dshi_3039 are separated by 3 nucleotidesDshi_3039 and Dshi_3040 are separated by 118 nucleotides Dshi_3037: Dshi_3037 - efflux transporter, RND family, MFP subunit (RefSeq), at 3,206,616 to 3,207,824 _3037 Dshi_3038: Dshi_3038 - transcriptional regulator, TetR family (RefSeq), at 3,207,941 to 3,208,633 _3038 Dshi_3039: Dshi_3039 - BLUF domain protein (RefSeq), at 3,208,637 to 3,209,044 _3039 Dshi_3040: Dshi_3040 - Dihydrodipicolinate reductase (RefSeq), at 3,209,163 to 3,209,972 _3040 Position (kb) 3208 3209 3210Strain fitness (log2 ratio) -2 -1 0 1at 3207.784 kb on + strandat 3207.804 kb on - strandat 3207.999 kb on - strandat 3208.083 kb on + strand, within Dshi_3038at 3208.167 kb on - strand, within Dshi_3038at 3208.198 kb on + strand, within Dshi_3038at 3208.206 kb on - strand, within Dshi_3038at 3208.227 kb on + strand, within Dshi_3038at 3208.271 kb on - strand, within Dshi_3038at 3208.401 kb on + strand, within Dshi_3038at 3208.433 kb on + strand, within Dshi_3038at 3208.443 kb on + strand, within Dshi_3038at 3208.456 kb on - strand, within Dshi_3038at 3208.526 kb on - strand, within Dshi_3038at 3208.627 kb on + strandat 3208.833 kb on - strand, within Dshi_3039at 3208.905 kb on - strand, within Dshi_3039at 3208.946 kb on - strand, within Dshi_3039at 3208.980 kb on + strand, within Dshi_3039at 3209.035 kb on - strandat 3209.103 kb on - strandat 3209.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. sodium fluoride 12.5 mM
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3,207,784 + +0.0
3,207,804 - +0.8
3,207,999 - +0.6
3,208,083 + Dshi_3038 0.20 -2.0
3,208,167 - Dshi_3038 0.33 -1.3
3,208,198 + Dshi_3038 0.37 -0.3
3,208,206 - Dshi_3038 0.38 +0.1
3,208,227 + Dshi_3038 0.41 +0.0
3,208,271 - Dshi_3038 0.48 -0.4
3,208,401 + Dshi_3038 0.66 -0.1
3,208,433 + Dshi_3038 0.71 -0.4
3,208,443 + Dshi_3038 0.72 -0.5
3,208,456 - Dshi_3038 0.74 +0.1
3,208,526 - Dshi_3038 0.84 -1.5
3,208,627 + +0.1
3,208,833 - Dshi_3039 0.48 +0.2
3,208,905 - Dshi_3039 0.66 +0.9
3,208,946 - Dshi_3039 0.76 +0.7
3,208,980 + Dshi_3039 0.84 +0.8
3,209,035 - -0.5
3,209,103 - +0.5
3,209,990 - +0.4

Or see this region's nucleotide sequence