Experiment: MoYLS4 with DETA/NO 100uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmF and ccmE are separated by 87 nucleotides ccmE and DVU1052 are separated by 137 nucleotides DVU1052 and DVU1054 are separated by 165 nucleotides
DVU1050: ccmF - cytochrome c-type biogenesis protein CcmF (TIGR), at 1,151,185 to 1,153,080
ccmF
DVU1051: ccmE - cytochrome c-type biogenesis protein CcmE (TIGR), at 1,153,168 to 1,153,581
ccmE
DVU1052: DVU1052 - CBS domain protein (TIGR), at 1,153,719 to 1,154,783
DVU1052
DVU1054: DVU1054 - hydrolase, HAD-superfamily, subfamily IIIA (TIGR), at 1,154,949 to 1,155,587
DVU1054
Position (kb)
1153
1154
1155 Strain fitness (log2 ratio)
-2
-1
0
1 at 1153.129 kb on - strand at 1153.129 kb on - strand at 1153.153 kb on - strand at 1153.671 kb on + strand at 1153.671 kb on + strand at 1153.831 kb on + strand, within DVU1052 at 1153.931 kb on - strand, within DVU1052 at 1153.981 kb on + strand, within DVU1052 at 1154.119 kb on - strand, within DVU1052 at 1154.131 kb on - strand, within DVU1052 at 1154.149 kb on - strand, within DVU1052 at 1154.166 kb on + strand, within DVU1052 at 1154.237 kb on - strand, within DVU1052 at 1154.378 kb on - strand, within DVU1052 at 1154.383 kb on - strand, within DVU1052 at 1154.414 kb on - strand, within DVU1052 at 1154.414 kb on - strand, within DVU1052 at 1154.414 kb on - strand, within DVU1052 at 1154.573 kb on + strand, within DVU1052 at 1154.578 kb on - strand, within DVU1052 at 1154.674 kb on + strand, within DVU1052 at 1154.735 kb on - strand at 1154.780 kb on - strand at 1154.845 kb on - strand at 1155.664 kb on + strand at 1155.684 kb on + strand at 1155.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with DETA/NO 100uM remove 1,153,129 - -0.8 1,153,129 - -0.0 1,153,153 - -1.0 1,153,671 + -0.5 1,153,671 + -0.8 1,153,831 + DVU1052 0.11 -2.2 1,153,931 - DVU1052 0.20 -1.5 1,153,981 + DVU1052 0.25 +0.2 1,154,119 - DVU1052 0.38 +0.5 1,154,131 - DVU1052 0.39 +0.8 1,154,149 - DVU1052 0.40 +0.9 1,154,166 + DVU1052 0.42 -0.1 1,154,237 - DVU1052 0.49 -0.2 1,154,378 - DVU1052 0.62 -0.3 1,154,383 - DVU1052 0.62 +0.7 1,154,414 - DVU1052 0.65 +0.6 1,154,414 - DVU1052 0.65 -0.1 1,154,414 - DVU1052 0.65 +0.4 1,154,573 + DVU1052 0.80 -0.0 1,154,578 - DVU1052 0.81 -0.0 1,154,674 + DVU1052 0.90 -0.2 1,154,735 - -1.9 1,154,780 - -0.0 1,154,845 - +0.1 1,155,664 + +0.9 1,155,684 + -0.5 1,155,744 - +1.0
Or see this region's nucleotide sequence