Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1471

Experiment: Low light with N2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1469 and Rru_A1470 are separated by 3 nucleotidesRru_A1470 and Rru_A1471 are separated by 73 nucleotidesRru_A1471 and Rru_A1472 overlap by 8 nucleotidesRru_A1472 and Rru_A1473 are separated by 104 nucleotides Rru_A1469: Rru_A1469 - Acetyl-CoA C-acetyltransferase (NCBI), at 1,736,050 to 1,737,225 _A1469 Rru_A1470: Rru_A1470 - hypothetical protein (NCBI), at 1,737,229 to 1,737,510 _A1470 Rru_A1471: Rru_A1471 - Butyrate-acetoacetate CoA-transferase (NCBI), at 1,737,584 to 1,738,243 _A1471 Rru_A1472: Rru_A1472 - Acetate CoA-transferase (NCBI), at 1,738,236 to 1,738,898 _A1472 Rru_A1473: Rru_A1473 - hypothetical protein (NCBI), at 1,739,003 to 1,739,317 _A1473 Position (kb) 1737 1738 1739Strain fitness (log2 ratio) -1 0 1at 1737.144 kb on + strandat 1737.435 kb on + strand, within Rru_A1470at 1737.436 kb on - strand, within Rru_A1470at 1737.559 kb on + strandat 1737.812 kb on - strand, within Rru_A1471at 1738.143 kb on + strand, within Rru_A1471at 1738.143 kb on + strand, within Rru_A1471at 1738.143 kb on + strand, within Rru_A1471at 1738.144 kb on - strand, within Rru_A1471at 1738.144 kb on - strand, within Rru_A1471at 1738.797 kb on - strand, within Rru_A1472at 1738.797 kb on - strand, within Rru_A1472at 1739.004 kb on + strandat 1739.005 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Low light with N2
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1,737,144 + -0.7
1,737,435 + Rru_A1470 0.73 -0.4
1,737,436 - Rru_A1470 0.73 +0.5
1,737,559 + +0.3
1,737,812 - Rru_A1471 0.35 +0.8
1,738,143 + Rru_A1471 0.85 -0.6
1,738,143 + Rru_A1471 0.85 -0.6
1,738,143 + Rru_A1471 0.85 -0.0
1,738,144 - Rru_A1471 0.85 -0.4
1,738,144 - Rru_A1471 0.85 -0.6
1,738,797 - Rru_A1472 0.85 +0.8
1,738,797 - Rru_A1472 0.85 +0.8
1,739,004 + +0.6
1,739,005 - -0.3

Or see this region's nucleotide sequence