Experiment: Low light with N2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0765 and Rru_A0766 are separated by 987 nucleotides Rru_A0766 and Rru_A0767 are separated by 98 nucleotides
Rru_A0765: Rru_A0765 - hypothetical protein (NCBI), at 898,719 to 902,156
_A0765
Rru_A0766: Rru_A0766 - Adenosine deaminase (NCBI), at 903,144 to 904,148
_A0766
Rru_A0767: Rru_A0767 - ABC transporter component (NCBI), at 904,247 to 905,320
_A0767
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 902.189 kb on - strand at 902.201 kb on - strand at 902.241 kb on + strand at 902.241 kb on + strand at 902.241 kb on + strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.242 kb on - strand at 902.264 kb on - strand at 902.298 kb on + strand at 902.298 kb on + strand at 902.299 kb on - strand at 902.300 kb on - strand at 902.306 kb on + strand at 902.306 kb on + strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.307 kb on - strand at 902.356 kb on + strand at 902.357 kb on - strand at 902.365 kb on + strand at 902.365 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.428 kb on + strand at 902.438 kb on - strand at 902.451 kb on + strand at 902.451 kb on + strand at 902.451 kb on + strand at 902.483 kb on - strand at 902.649 kb on + strand at 902.649 kb on + strand at 902.650 kb on - strand at 902.662 kb on - strand at 902.695 kb on + strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.696 kb on - strand at 902.700 kb on + strand at 902.751 kb on - strand at 902.920 kb on + strand at 902.984 kb on - strand at 903.023 kb on + strand at 903.025 kb on + strand at 903.026 kb on - strand at 903.026 kb on - strand at 903.030 kb on + strand at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.290 kb on + strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.291 kb on - strand, within Rru_A0766 at 903.292 kb on + strand, within Rru_A0766 at 903.293 kb on - strand, within Rru_A0766 at 903.305 kb on - strand, within Rru_A0766 at 903.532 kb on + strand, within Rru_A0766 at 903.533 kb on - strand, within Rru_A0766 at 903.533 kb on - strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.641 kb on + strand, within Rru_A0766 at 903.642 kb on - strand, within Rru_A0766 at 903.726 kb on + strand, within Rru_A0766 at 903.727 kb on - strand, within Rru_A0766 at 903.834 kb on - strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.898 kb on + strand, within Rru_A0766 at 903.899 kb on - strand, within Rru_A0766 at 903.948 kb on - strand, within Rru_A0766 at 903.959 kb on - strand, within Rru_A0766 at 903.959 kb on - strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.994 kb on + strand, within Rru_A0766 at 903.995 kb on - strand, within Rru_A0766 at 903.995 kb on - strand, within Rru_A0766 at 904.179 kb on + strand at 904.179 kb on + strand at 904.179 kb on + strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.180 kb on - strand at 904.184 kb on - strand at 904.626 kb on + strand, within Rru_A0767 at 904.626 kb on + strand, within Rru_A0767 at 904.626 kb on + strand, within Rru_A0767 at 904.627 kb on - strand, within Rru_A0767
Per-strain Table
Position Strand Gene LocusTag Fraction Low light with N2 remove 902,189 - +0.1 902,201 - -0.3 902,241 + -0.5 902,241 + +0.1 902,241 + +0.8 902,242 - -0.2 902,242 - -0.5 902,242 - -1.0 902,242 - -1.1 902,264 - -0.8 902,298 + -0.2 902,298 + -1.5 902,299 - -0.2 902,300 - -0.1 902,306 + +0.8 902,306 + -2.7 902,307 - +0.8 902,307 - +0.3 902,307 - -0.4 902,307 - -0.4 902,356 + -0.7 902,357 - +0.0 902,365 + +0.2 902,365 + -0.1 902,428 + -0.2 902,428 + -0.1 902,428 + +0.8 902,428 + +0.1 902,438 - +0.8 902,451 + +0.2 902,451 + -0.4 902,451 + +1.1 902,483 - -0.5 902,649 + +0.8 902,649 + +0.8 902,650 - +0.0 902,662 - +0.1 902,695 + -1.4 902,696 - +0.2 902,696 - -0.9 902,696 - +0.8 902,696 - +0.5 902,696 - -0.5 902,696 - -0.5 902,700 + +0.8 902,751 - -0.2 902,920 + +0.8 902,984 - +0.1 903,023 + -0.6 903,025 + -0.6 903,026 - -3.3 903,026 - -0.1 903,030 + -0.5 903,290 + Rru_A0766 0.15 +0.8 903,290 + Rru_A0766 0.15 -0.2 903,290 + Rru_A0766 0.15 +0.1 903,290 + Rru_A0766 0.15 +0.1 903,290 + Rru_A0766 0.15 +0.2 903,290 + Rru_A0766 0.15 +0.0 903,290 + Rru_A0766 0.15 -0.2 903,290 + Rru_A0766 0.15 -0.2 903,291 - Rru_A0766 0.15 -0.6 903,291 - Rru_A0766 0.15 +0.8 903,291 - Rru_A0766 0.15 +0.0 903,291 - Rru_A0766 0.15 +1.4 903,292 + Rru_A0766 0.15 +0.8 903,293 - Rru_A0766 0.15 +1.4 903,305 - Rru_A0766 0.16 +0.9 903,532 + Rru_A0766 0.39 +0.5 903,533 - Rru_A0766 0.39 -0.2 903,533 - Rru_A0766 0.39 +0.3 903,641 + Rru_A0766 0.49 -0.5 903,641 + Rru_A0766 0.49 -0.5 903,641 + Rru_A0766 0.49 -1.2 903,642 - Rru_A0766 0.50 +0.1 903,726 + Rru_A0766 0.58 +0.2 903,727 - Rru_A0766 0.58 +0.5 903,834 - Rru_A0766 0.69 +0.8 903,898 + Rru_A0766 0.75 +0.4 903,898 + Rru_A0766 0.75 -0.4 903,898 + Rru_A0766 0.75 -0.0 903,899 - Rru_A0766 0.75 -1.7 903,948 - Rru_A0766 0.80 +0.8 903,959 - Rru_A0766 0.81 +0.2 903,959 - Rru_A0766 0.81 +0.8 903,994 + Rru_A0766 0.85 +0.1 903,994 + Rru_A0766 0.85 +0.7 903,994 + Rru_A0766 0.85 +0.2 903,995 - Rru_A0766 0.85 +0.8 903,995 - Rru_A0766 0.85 -0.7 904,179 + +0.1 904,179 + -0.3 904,179 + -0.2 904,180 - -0.3 904,180 - -0.4 904,180 - -0.2 904,180 - -1.0 904,180 - +0.0 904,180 - +0.1 904,180 - +0.2 904,184 - +1.0 904,626 + Rru_A0767 0.35 -0.0 904,626 + Rru_A0767 0.35 -0.7 904,626 + Rru_A0767 0.35 -0.1 904,627 - Rru_A0767 0.35 -0.4
Or see this region's nucleotide sequence