Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0489

Experiment: Low light with N2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0488 and Rru_A0489 are separated by 11 nucleotidesRru_A0489 and Rru_A0490 overlap by 11 nucleotidesRru_A0490 and Rru_A0491 overlap by 4 nucleotides Rru_A0488: Rru_A0488 - TonB-dependent receptor (NCBI), at 573,218 to 575,266 _A0488 Rru_A0489: Rru_A0489 - Periplasmic binding protein (NCBI), at 575,278 to 576,222 _A0489 Rru_A0490: Rru_A0490 - transport system permease protein (NCBI), at 576,212 to 577,213 _A0490 Rru_A0491: Rru_A0491 - ABC transporter component (NCBI), at 577,210 to 578,013 _A0491 Position (kb) 575 576 577Strain fitness (log2 ratio) -2 -1 0 1at 574.286 kb on + strand, within Rru_A0488at 574.457 kb on + strand, within Rru_A0488at 574.544 kb on - strand, within Rru_A0488at 574.559 kb on + strand, within Rru_A0488at 574.559 kb on + strand, within Rru_A0488at 574.560 kb on - strand, within Rru_A0488at 574.628 kb on + strand, within Rru_A0488at 574.629 kb on - strand, within Rru_A0488at 574.629 kb on - strand, within Rru_A0488at 574.757 kb on + strand, within Rru_A0488at 574.757 kb on + strand, within Rru_A0488at 574.757 kb on + strand, within Rru_A0488at 574.758 kb on - strand, within Rru_A0488at 574.758 kb on - strand, within Rru_A0488at 574.758 kb on - strand, within Rru_A0488at 574.762 kb on - strand, within Rru_A0488at 574.796 kb on + strand, within Rru_A0488at 574.796 kb on + strand, within Rru_A0488at 574.796 kb on + strand, within Rru_A0488at 574.796 kb on + strand, within Rru_A0488at 574.797 kb on - strand, within Rru_A0488at 574.797 kb on - strand, within Rru_A0488at 574.797 kb on - strand, within Rru_A0488at 574.798 kb on + strand, within Rru_A0488at 574.799 kb on - strand, within Rru_A0488at 574.799 kb on - strand, within Rru_A0488at 574.799 kb on - strand, within Rru_A0488at 574.913 kb on + strand, within Rru_A0488at 574.914 kb on - strand, within Rru_A0488at 574.914 kb on - strand, within Rru_A0488at 574.914 kb on - strand, within Rru_A0488at 574.931 kb on + strand, within Rru_A0488at 574.932 kb on - strand, within Rru_A0488at 574.932 kb on - strand, within Rru_A0488at 574.932 kb on - strand, within Rru_A0488at 574.932 kb on - strand, within Rru_A0488at 575.039 kb on + strand, within Rru_A0488at 575.054 kb on + strand, within Rru_A0488at 575.054 kb on + strand, within Rru_A0488at 575.111 kb on + strandat 575.111 kb on + strandat 575.111 kb on + strandat 575.111 kb on + strandat 575.111 kb on + strandat 575.112 kb on - strandat 575.112 kb on - strandat 575.112 kb on - strandat 575.139 kb on - strandat 575.139 kb on - strandat 575.139 kb on - strandat 575.166 kb on - strandat 575.166 kb on - strandat 575.198 kb on + strandat 575.199 kb on - strandat 575.199 kb on - strandat 575.264 kb on + strandat 575.264 kb on + strandat 575.264 kb on + strandat 575.819 kb on - strand, within Rru_A0489at 575.819 kb on - strand, within Rru_A0489at 575.819 kb on - strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.820 kb on + strand, within Rru_A0489at 575.821 kb on - strand, within Rru_A0489at 575.821 kb on - strand, within Rru_A0489at 575.821 kb on - strand, within Rru_A0489at 576.455 kb on + strand, within Rru_A0490at 576.533 kb on + strand, within Rru_A0490at 576.534 kb on - strand, within Rru_A0490at 576.534 kb on - strand, within Rru_A0490at 576.536 kb on - strand, within Rru_A0490at 577.210 kb on - strandat 577.210 kb on - strandat 577.210 kb on - strandat 577.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Low light with N2
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574,286 + Rru_A0488 0.52 +0.0
574,457 + Rru_A0488 0.60 +0.7
574,544 - Rru_A0488 0.65 -1.7
574,559 + Rru_A0488 0.65 -0.3
574,559 + Rru_A0488 0.65 -1.3
574,560 - Rru_A0488 0.65 +0.1
574,628 + Rru_A0488 0.69 +0.8
574,629 - Rru_A0488 0.69 +0.9
574,629 - Rru_A0488 0.69 -2.1
574,757 + Rru_A0488 0.75 -0.4
574,757 + Rru_A0488 0.75 -1.7
574,757 + Rru_A0488 0.75 +0.2
574,758 - Rru_A0488 0.75 +1.5
574,758 - Rru_A0488 0.75 -0.1
574,758 - Rru_A0488 0.75 +0.9
574,762 - Rru_A0488 0.75 -0.3
574,796 + Rru_A0488 0.77 +0.7
574,796 + Rru_A0488 0.77 -0.0
574,796 + Rru_A0488 0.77 +0.9
574,796 + Rru_A0488 0.77 +0.0
574,797 - Rru_A0488 0.77 -0.2
574,797 - Rru_A0488 0.77 +0.9
574,797 - Rru_A0488 0.77 -0.2
574,798 + Rru_A0488 0.77 -0.6
574,799 - Rru_A0488 0.77 -0.1
574,799 - Rru_A0488 0.77 +0.9
574,799 - Rru_A0488 0.77 -0.1
574,913 + Rru_A0488 0.83 -1.1
574,914 - Rru_A0488 0.83 +0.9
574,914 - Rru_A0488 0.83 -0.4
574,914 - Rru_A0488 0.83 +0.9
574,931 + Rru_A0488 0.84 +0.9
574,932 - Rru_A0488 0.84 +0.4
574,932 - Rru_A0488 0.84 +0.0
574,932 - Rru_A0488 0.84 +0.3
574,932 - Rru_A0488 0.84 +0.0
575,039 + Rru_A0488 0.89 +0.2
575,054 + Rru_A0488 0.90 +0.0
575,054 + Rru_A0488 0.90 -0.3
575,111 + -0.2
575,111 + -0.3
575,111 + -0.2
575,111 + -0.1
575,111 + +0.6
575,112 - +0.2
575,112 - +0.3
575,112 - -0.3
575,139 - +0.4
575,139 - -0.2
575,139 - -0.3
575,166 - -0.5
575,166 - -0.2
575,198 + +0.1
575,199 - +0.1
575,199 - -0.3
575,264 + +0.9
575,264 + -1.3
575,264 + -0.3
575,819 - Rru_A0489 0.57 +0.1
575,819 - Rru_A0489 0.57 +0.0
575,819 - Rru_A0489 0.57 +0.2
575,820 + Rru_A0489 0.57 +0.1
575,820 + Rru_A0489 0.57 +0.0
575,820 + Rru_A0489 0.57 -0.6
575,820 + Rru_A0489 0.57 -0.3
575,820 + Rru_A0489 0.57 +0.0
575,821 - Rru_A0489 0.57 +0.7
575,821 - Rru_A0489 0.57 +1.0
575,821 - Rru_A0489 0.57 +0.2
576,455 + Rru_A0490 0.24 +0.9
576,533 + Rru_A0490 0.32 -0.4
576,534 - Rru_A0490 0.32 -0.2
576,534 - Rru_A0490 0.32 +1.1
576,536 - Rru_A0490 0.32 -0.2
577,210 - -0.5
577,210 - -0.4
577,210 - -0.1
577,210 - +0.2

Or see this region's nucleotide sequence