Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0337

Experiment: Low light with N2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0336 and Rru_A0337 are separated by 157 nucleotidesRru_A0337 and Rru_A0338 are separated by 54 nucleotidesRru_A0338 and Rru_A0339 overlap by 4 nucleotides Rru_A0336: Rru_A0336 - hypothetical protein (NCBI), at 407,932 to 408,774 _A0336 Rru_A0337: Rru_A0337 - Predicted transcriptional regulator (NCBI), at 408,932 to 409,318 _A0337 Rru_A0338: Rru_A0338 - hypothetical protein (NCBI), at 409,373 to 409,699 _A0338 Rru_A0339: Rru_A0339 - Short-chain dehydrogenase/reductase SDR (NCBI), at 409,696 to 410,487 _A0339 Position (kb) 408 409 410Strain fitness (log2 ratio) -2 -1 0 1at 408.020 kb on - strand, within Rru_A0336at 408.265 kb on + strand, within Rru_A0336at 408.265 kb on + strand, within Rru_A0336at 408.265 kb on + strand, within Rru_A0336at 408.266 kb on - strand, within Rru_A0336at 408.266 kb on - strand, within Rru_A0336at 408.398 kb on - strand, within Rru_A0336at 408.520 kb on + strand, within Rru_A0336at 408.520 kb on + strand, within Rru_A0336at 408.520 kb on + strand, within Rru_A0336at 408.520 kb on + strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.521 kb on - strand, within Rru_A0336at 408.539 kb on + strand, within Rru_A0336at 408.542 kb on + strand, within Rru_A0336at 408.559 kb on + strand, within Rru_A0336at 408.559 kb on + strand, within Rru_A0336at 408.559 kb on + strand, within Rru_A0336at 408.560 kb on - strand, within Rru_A0336at 408.659 kb on + strand, within Rru_A0336at 408.660 kb on - strand, within Rru_A0336at 408.660 kb on - strand, within Rru_A0336at 408.660 kb on - strand, within Rru_A0336at 408.661 kb on + strand, within Rru_A0336at 408.661 kb on + strand, within Rru_A0336at 408.662 kb on - strand, within Rru_A0336at 408.662 kb on - strand, within Rru_A0336at 408.662 kb on - strand, within Rru_A0336at 408.773 kb on - strandat 408.925 kb on + strandat 409.029 kb on + strand, within Rru_A0337at 409.029 kb on + strand, within Rru_A0337at 409.029 kb on + strand, within Rru_A0337at 409.029 kb on + strand, within Rru_A0337at 409.029 kb on + strand, within Rru_A0337at 409.075 kb on + strand, within Rru_A0337at 409.076 kb on - strand, within Rru_A0337at 409.290 kb on + strandat 409.339 kb on + strandat 409.340 kb on - strandat 409.406 kb on + strand, within Rru_A0338at 409.446 kb on + strand, within Rru_A0338at 409.446 kb on + strand, within Rru_A0338at 409.446 kb on + strand, within Rru_A0338at 409.447 kb on - strand, within Rru_A0338at 409.547 kb on + strand, within Rru_A0338at 409.570 kb on + strand, within Rru_A0338at 409.944 kb on + strand, within Rru_A0339at 410.109 kb on + strand, within Rru_A0339at 410.109 kb on + strand, within Rru_A0339at 410.109 kb on + strand, within Rru_A0339at 410.109 kb on + strand, within Rru_A0339at 410.109 kb on + strand, within Rru_A0339at 410.110 kb on - strand, within Rru_A0339at 410.110 kb on - strand, within Rru_A0339at 410.110 kb on - strand, within Rru_A0339at 410.110 kb on - strand, within Rru_A0339at 410.110 kb on - strand, within Rru_A0339at 410.110 kb on - strand, within Rru_A0339at 410.188 kb on + strand, within Rru_A0339at 410.188 kb on + strand, within Rru_A0339at 410.189 kb on - strand, within Rru_A0339at 410.189 kb on - strand, within Rru_A0339at 410.258 kb on + strand, within Rru_A0339at 410.317 kb on + strand, within Rru_A0339

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Per-strain Table

Position Strand Gene LocusTag Fraction Low light with N2
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408,020 - Rru_A0336 0.10 +0.2
408,265 + Rru_A0336 0.40 -0.5
408,265 + Rru_A0336 0.40 -0.3
408,265 + Rru_A0336 0.40 -0.1
408,266 - Rru_A0336 0.40 -0.7
408,266 - Rru_A0336 0.40 +0.9
408,398 - Rru_A0336 0.55 +1.3
408,520 + Rru_A0336 0.70 -0.5
408,520 + Rru_A0336 0.70 -0.6
408,520 + Rru_A0336 0.70 -0.1
408,520 + Rru_A0336 0.70 -0.1
408,521 - Rru_A0336 0.70 -0.1
408,521 - Rru_A0336 0.70 -0.1
408,521 - Rru_A0336 0.70 -0.9
408,521 - Rru_A0336 0.70 -0.1
408,521 - Rru_A0336 0.70 +0.9
408,521 - Rru_A0336 0.70 +0.1
408,521 - Rru_A0336 0.70 -0.2
408,521 - Rru_A0336 0.70 +0.4
408,521 - Rru_A0336 0.70 +0.3
408,539 + Rru_A0336 0.72 -0.3
408,542 + Rru_A0336 0.72 -0.3
408,559 + Rru_A0336 0.74 -0.1
408,559 + Rru_A0336 0.74 +0.7
408,559 + Rru_A0336 0.74 -0.0
408,560 - Rru_A0336 0.74 +0.1
408,659 + Rru_A0336 0.86 -0.6
408,660 - Rru_A0336 0.86 -0.1
408,660 - Rru_A0336 0.86 +0.2
408,660 - Rru_A0336 0.86 +0.2
408,661 + Rru_A0336 0.86 +0.5
408,661 + Rru_A0336 0.86 -0.1
408,662 - Rru_A0336 0.87 +0.9
408,662 - Rru_A0336 0.87 -1.1
408,662 - Rru_A0336 0.87 -0.1
408,773 - -1.1
408,925 + +0.1
409,029 + Rru_A0337 0.25 -0.4
409,029 + Rru_A0337 0.25 +0.9
409,029 + Rru_A0337 0.25 +0.9
409,029 + Rru_A0337 0.25 -0.5
409,029 + Rru_A0337 0.25 -0.4
409,075 + Rru_A0337 0.37 +0.9
409,076 - Rru_A0337 0.37 -0.8
409,290 + -0.0
409,339 + +0.3
409,340 - +0.6
409,406 + Rru_A0338 0.10 -0.1
409,446 + Rru_A0338 0.22 +0.2
409,446 + Rru_A0338 0.22 -0.4
409,446 + Rru_A0338 0.22 -0.7
409,447 - Rru_A0338 0.23 +0.3
409,547 + Rru_A0338 0.53 -2.0
409,570 + Rru_A0338 0.60 -0.6
409,944 + Rru_A0339 0.31 -0.4
410,109 + Rru_A0339 0.52 -0.3
410,109 + Rru_A0339 0.52 -0.4
410,109 + Rru_A0339 0.52 -0.9
410,109 + Rru_A0339 0.52 -1.3
410,109 + Rru_A0339 0.52 +0.1
410,110 - Rru_A0339 0.52 -0.6
410,110 - Rru_A0339 0.52 -0.4
410,110 - Rru_A0339 0.52 +0.3
410,110 - Rru_A0339 0.52 -0.6
410,110 - Rru_A0339 0.52 +0.2
410,110 - Rru_A0339 0.52 -0.2
410,188 + Rru_A0339 0.62 +0.4
410,188 + Rru_A0339 0.62 -0.8
410,189 - Rru_A0339 0.62 +0.9
410,189 - Rru_A0339 0.62 +0.9
410,258 + Rru_A0339 0.71 -0.4
410,317 + Rru_A0339 0.78 -0.2

Or see this region's nucleotide sequence